Design of ultrasensitive probes for human neutrophil elastase through hybrid combinatorial substrate library profiling

P Kasperkiewicz, M Poreba… - Proceedings of the …, 2014 - National Acad Sciences
The exploration of protease substrate specificity is generally restricted to naturally occurring
amino acids, limiting the degree of conformational space that can be surveyed. We …

Current strategies for probing substrate specificity of proteases

M Poreba, M Drag - Current medicinal chemistry, 2010 - ingentaconnect.com
In this review we describe in detail the available technologies used for investigating the
substrate specificity of proteases. Critical comparison of the available detection methods and …

Mass spectrometry‐based proteomics strategies for protease cleavage site identification

BHJ van den Berg, A Tholey - Proteomics, 2012 - Wiley Online Library
Protease‐catalyzed hydrolysis of peptide bonds is one of the most pivotal post‐translational
modifications fulfilling manifold functions in the regulation of cellular processes. Therefore …

Proteolytic Activity Matrix Analysis (PrAMA) for simultaneous determination of multiple protease activities

MA Miller, L Barkal, K Jeng, A Herrlich… - Integrative …, 2011 - academic.oup.com
Matrix metalloproteinases (MMPs) and A Disintegrin and Metalloproteinases (ADAMs) are
two related protease families that play key roles in matrix remodeling and growth factor …

HTS by NMR of combinatorial libraries: a fragment-based approach to ligand discovery

B Wu, Z Zhang, R Noberini, E Barile, M Giulianotti… - Chemistry & biology, 2013 - cell.com
Fragment-based ligand design (FBLD) approaches have become more widely used in drug
discovery projects from both academia and industry, and are even often preferred to …

Macromolecular assembly-driven processing of the 2/3 cleavage site in the alphavirus replicase polyprotein

A Lulla, V Lulla, A Merits - Journal of virology, 2012 - Am Soc Microbiol
Semliki Forest virus (SFV) is a member of the Alphavirus genus, which produces its
replicase proteins in the form of a nonstructural (ns) polyprotein precursor P1234. The …

Peptide length and leaving-group sterics influence potency of peptide phosphonate protease inhibitors

CM Brown, M Ray, AA Eroy-Reveles, P Egea… - Chemistry & biology, 2011 - cell.com
The ability to follow enzyme activity in a cellular context represents a challenging
technological frontier that impacts fields ranging from disease pathogenesis to epigenetics …

Recent advances and concepts in substrate specificity determination of proteases using tailored libraries of fluorogenic substrates with unnatural amino acids

W Rut, P Kasperkiewicz, A Byzia, M Poreba… - Biological …, 2015 - degruyter.com
Substrate specificity of proteases can be determined using several methods among which
the most frequently used are positional scanning library, proteomics and phage display …

Quantitative protease cleavage site profiling using tandem-mass-tag labeling and LC–MALDI-TOF/TOF MS/MS analysis

T Jakoby, BHJ van den Berg… - Journal of Proteome …, 2012 - ACS Publications
Knowledge of cleavage site specificity and activity are major prerequisites for understanding
protease function. On the basis of a recently presented approach for proteomic identification …

Recent development of highly sensitive protease assay methods: Signal amplification through enzyme cascades

HK Yoon, ST Jung, JH Kim, TH Yoo - Biotechnology and bioprocess …, 2012 - Springer
Proteases are involved in almost all biological processes, and therefore, aberrant activity of
many of these enzymes is an important indicator of disease. Various methods have been …