Design of ultrasensitive probes for human neutrophil elastase through hybrid combinatorial substrate library profiling
P Kasperkiewicz, M Poreba… - Proceedings of the …, 2014 - National Acad Sciences
The exploration of protease substrate specificity is generally restricted to naturally occurring
amino acids, limiting the degree of conformational space that can be surveyed. We …
amino acids, limiting the degree of conformational space that can be surveyed. We …
Current strategies for probing substrate specificity of proteases
In this review we describe in detail the available technologies used for investigating the
substrate specificity of proteases. Critical comparison of the available detection methods and …
substrate specificity of proteases. Critical comparison of the available detection methods and …
Mass spectrometry‐based proteomics strategies for protease cleavage site identification
BHJ van den Berg, A Tholey - Proteomics, 2012 - Wiley Online Library
Protease‐catalyzed hydrolysis of peptide bonds is one of the most pivotal post‐translational
modifications fulfilling manifold functions in the regulation of cellular processes. Therefore …
modifications fulfilling manifold functions in the regulation of cellular processes. Therefore …
Proteolytic Activity Matrix Analysis (PrAMA) for simultaneous determination of multiple protease activities
MA Miller, L Barkal, K Jeng, A Herrlich… - Integrative …, 2011 - academic.oup.com
Matrix metalloproteinases (MMPs) and A Disintegrin and Metalloproteinases (ADAMs) are
two related protease families that play key roles in matrix remodeling and growth factor …
two related protease families that play key roles in matrix remodeling and growth factor …
HTS by NMR of combinatorial libraries: a fragment-based approach to ligand discovery
B Wu, Z Zhang, R Noberini, E Barile, M Giulianotti… - Chemistry & biology, 2013 - cell.com
Fragment-based ligand design (FBLD) approaches have become more widely used in drug
discovery projects from both academia and industry, and are even often preferred to …
discovery projects from both academia and industry, and are even often preferred to …
Macromolecular assembly-driven processing of the 2/3 cleavage site in the alphavirus replicase polyprotein
Semliki Forest virus (SFV) is a member of the Alphavirus genus, which produces its
replicase proteins in the form of a nonstructural (ns) polyprotein precursor P1234. The …
replicase proteins in the form of a nonstructural (ns) polyprotein precursor P1234. The …
Peptide length and leaving-group sterics influence potency of peptide phosphonate protease inhibitors
CM Brown, M Ray, AA Eroy-Reveles, P Egea… - Chemistry & biology, 2011 - cell.com
The ability to follow enzyme activity in a cellular context represents a challenging
technological frontier that impacts fields ranging from disease pathogenesis to epigenetics …
technological frontier that impacts fields ranging from disease pathogenesis to epigenetics …
Recent advances and concepts in substrate specificity determination of proteases using tailored libraries of fluorogenic substrates with unnatural amino acids
Substrate specificity of proteases can be determined using several methods among which
the most frequently used are positional scanning library, proteomics and phage display …
the most frequently used are positional scanning library, proteomics and phage display …
Quantitative protease cleavage site profiling using tandem-mass-tag labeling and LC–MALDI-TOF/TOF MS/MS analysis
T Jakoby, BHJ van den Berg… - Journal of Proteome …, 2012 - ACS Publications
Knowledge of cleavage site specificity and activity are major prerequisites for understanding
protease function. On the basis of a recently presented approach for proteomic identification …
protease function. On the basis of a recently presented approach for proteomic identification …
Recent development of highly sensitive protease assay methods: Signal amplification through enzyme cascades
HK Yoon, ST Jung, JH Kim, TH Yoo - Biotechnology and bioprocess …, 2012 - Springer
Proteases are involved in almost all biological processes, and therefore, aberrant activity of
many of these enzymes is an important indicator of disease. Various methods have been …
many of these enzymes is an important indicator of disease. Various methods have been …