A review of methods available to estimate solvent-accessible surface areas of soluble proteins in the folded and unfolded states
S Ausaf Ali, M Imtaiyaz Hassan, A Islam… - Current Protein and …, 2014 - benthamdirect.com
Solvent accessible surface area (SASA) of proteins has always been considered as a
decisive factor in protein folding and stability studies. It is defined as the surface …
decisive factor in protein folding and stability studies. It is defined as the surface …
[HTML][HTML] Deep learning for protein secondary structure prediction: Pre and post-AlphaFold
DP Ismi, R Pulungan - Computational and structural biotechnology …, 2022 - Elsevier
This paper aims to provide a comprehensive review of the trends and challenges of deep
neural networks for protein secondary structure prediction (PSSP). In recent years, deep …
neural networks for protein secondary structure prediction (PSSP). In recent years, deep …
New anticancer potential Pt complex with tertamyl dithiocarbamate ligand: Synthesis, DNA targeting behavior, molecular dynamic, and biological activity
ME Moghadam, M Rezaeisadat… - Journal of Molecular …, 2023 - Elsevier
In this research, a new platinum complex,[Pt (phen)(tertamyl. dtc)] NO 3, where (phen) is 1,
10-phenanthroline and (tertamyl. dtc) is the tertamyl-dithiocarbamate ligand, has been …
10-phenanthroline and (tertamyl. dtc) is the tertamyl-dithiocarbamate ligand, has been …
Prediction of deleterious nonsynonymous single‐nucleotide polymorphism for human diseases
J Wu, R Jiang - The Scientific World Journal, 2013 - Wiley Online Library
The identification of genetic variants that are responsible for human inherited diseases is a
fundamental problem in human and medical genetics. As a typical type of genetic variation …
fundamental problem in human and medical genetics. As a typical type of genetic variation …
CSI 2.0: a significantly improved version of the Chemical Shift Index
NE Hafsa, DS Wishart - Journal of biomolecular NMR, 2014 - Springer
Protein chemical shifts have long been used by NMR spectroscopists to assist with
secondary structure assignment and to provide useful distance and torsion angle constraint …
secondary structure assignment and to provide useful distance and torsion angle constraint …
Computer-aided identification of lung cancer inhibitors through homology modeling and virtual screening
A Haredi Abdelmonsef - Egyptian Journal of Medical Human Genetics, 2019 - Springer
Background Lung cancer is the most often event cancer around the world and the first
leading cause of cancer death in human beings. Rab39a protein is implicated in vesicular …
leading cause of cancer death in human beings. Rab39a protein is implicated in vesicular …
Identification of SARS-CoV-2 surface therapeutic targets and drugs using molecular modeling methods for inhibition of the virus entry
S Farhadian, E Heidari-Soureshjani… - Journal of Molecular …, 2022 - Elsevier
Although COVID-19 emerged as a major concern to public health around the world, no
licensed medication has been found as of yet to efficiently stop the virus spread and treat the …
licensed medication has been found as of yet to efficiently stop the virus spread and treat the …
Insight into improved thermostability of cold-adapted staphylococcal lipase by glycine to cysteine mutation
J Veno, RNZRA Rahman, M Masomian, MSM Ali… - Molecules, 2019 - mdpi.com
Thermostability remains one of the most desirable traits in many lipases. Numerous studies
have revealed promising strategies to improve thermostability and random mutagenesis …
have revealed promising strategies to improve thermostability and random mutagenesis …
High-throughput virtual screening, ADME analysis, and estimation of MM/GBSA binding-free energies of azoles as potential inhibitors of Mycobacterium tuberculosis …
M Madhavaram, V Nampally… - Journal of Receptors …, 2019 - Taylor & Francis
Isoniazid, also known as isonicotinyl hydrazide (INH), was used as a frontline drug to treat
Mycobacterium tuberculosis. The in silico virtual screening is used to identify the effective …
Mycobacterium tuberculosis. The in silico virtual screening is used to identify the effective …
Improved prediction of accessible surface area results in efficient energy function application
An accurate prediction of real value accessible surface area (ASA) from protein sequence
alone has wide application in the field of bioinformatics and computational biology. ASA has …
alone has wide application in the field of bioinformatics and computational biology. ASA has …