Genomic approaches towards finding cis-regulatory modules in animals
RC Hardison, J Taylor - Nature Reviews Genetics, 2012 - nature.com
Differential gene expression is the fundamental mechanism underlying animal development
and cell differentiation. However, it is a challenge to identify comprehensively and accurately …
and cell differentiation. However, it is a challenge to identify comprehensively and accurately …
Genes, mutations, and human inherited disease at the dawn of the age of personalized genomics
The number of reported germline mutations in human nuclear genes, either underlying or
associated with inherited disease, has now exceeded 100,000 in more than 3,700 different …
associated with inherited disease, has now exceeded 100,000 in more than 3,700 different …
Lineage-specific DNA methylation in T cells correlates with histone methylation and enhancer activity
C Schmidl, M Klug, TJ Boeld, R Andreesen… - Genome …, 2009 - genome.cshlp.org
DNA methylation participates in establishing and maintaining chromatin structures and
regulates gene transcription during mammalian development and cellular differentiation …
regulates gene transcription during mammalian development and cellular differentiation …
What does our genome encode?
JA Stamatoyannopoulos - Genome research, 2012 - genome.cshlp.org
In its first production phase, The ENCODE Project Consortium (ENCODE) has generated
thousands of genome-scale data sets, resulting in a genomic “parts list” that encompasses …
thousands of genome-scale data sets, resulting in a genomic “parts list” that encompasses …
Occupancy by key transcription factors is a more accurate predictor of enhancer activity than histone modifications or chromatin accessibility
Background Regulated gene expression controls organismal development, and variation in
regulatory patterns has been implicated in complex traits. Thus accurate prediction of …
regulatory patterns has been implicated in complex traits. Thus accurate prediction of …
Identifying transcriptional cis‐regulatory modules in animal genomes
K Suryamohan, MS Halfon - Wiley Interdisciplinary Reviews …, 2015 - Wiley Online Library
Gene expression is regulated through the activity of transcription factors (TF s) and
chromatin‐modifying proteins acting on specific DNA sequences, referred to as cis …
chromatin‐modifying proteins acting on specific DNA sequences, referred to as cis …
Disease-Causing 7.4 kb Cis-Regulatory Deletion Disrupting Conserved Non-Coding Sequences and Their Interaction with the FOXL2 Promotor: Implications for …
B D'haene, C Attanasio, D Beysen, J Dostie… - PLoS …, 2009 - journals.plos.org
To date, the contribution of disrupted potentially cis-regulatory conserved non-coding
sequences (CNCs) to human disease is most likely underestimated, as no systematic …
sequences (CNCs) to human disease is most likely underestimated, as no systematic …
The most deeply conserved noncoding sequences in plants serve similar functions to those in vertebrates despite large differences in evolutionary rates
D Burgess, M Freeling - The Plant Cell, 2014 - academic.oup.com
In vertebrates, conserved noncoding elements (CNEs) are functionally constrained
sequences that can show striking conservation over> 400 million years of evolutionary …
sequences that can show striking conservation over> 400 million years of evolutionary …
Balanced translocations in mental retardation
G Vandeweyer, RF Kooy - Human genetics, 2009 - Springer
Over the past few decades, the knowledge on genetic defects causing mental retardation
has dramatically increased. In this review, we discuss the importance of balanced …
has dramatically increased. In this review, we discuss the importance of balanced …
Extent of differential allelic expression of candidate breast cancer genes is similar in blood and breast
Introduction Normal gene expression variation is thought to play a central role in inter-
individual variation and susceptibility to disease. Regulatory polymorphisms in cis-acting …
individual variation and susceptibility to disease. Regulatory polymorphisms in cis-acting …