Genome folding through loop extrusion by SMC complexes

IF Davidson, JM Peters - Nature reviews Molecular cell biology, 2021 - nature.com
Genomic DNA is folded into loops and topologically associating domains (TADs), which
serve important structural and regulatory roles. It has been proposed that these genomic …

[HTML][HTML] Mechanisms of enhancer action: the known and the unknown

A Panigrahi, BW O'Malley - Genome biology, 2021 - Springer
Differential gene expression mechanisms ensure cellular differentiation and plasticity to
shape ontogenetic and phylogenetic diversity of cell types. A key regulator of differential …

Loop extrusion as a mechanism for formation of DNA damage repair foci

C Arnould, V Rocher, AL Finoux, T Clouaire, K Li… - Nature, 2021 - nature.com
The repair of DNA double-strand breaks (DSBs) is essential for safeguarding genome
integrity. When a DSB forms, the PI3K-related ATM kinase rapidly triggers the establishment …

Organizational principles of 3D genome architecture

MJ Rowley, VG Corces - Nature Reviews Genetics, 2018 - nature.com
Studies of 3D chromatin organization have suggested that chromosomes are hierarchically
organized into large compartments composed of smaller domains called topologically …

New insights into genome folding by loop extrusion from inducible degron technologies

E de Wit, EP Nora - Nature Reviews Genetics, 2023 - nature.com
Chromatin folds into dynamic loops that often span hundreds of kilobases and physically
wire distant loci together for gene regulation. These loops are continuously created …

WAPL maintains a cohesin loading cycle to preserve cell-type-specific distal gene regulation

NQ Liu, M Maresca, T van den Brand, L Braccioli… - Nature …, 2021 - nature.com
The cohesin complex has an essential role in maintaining genome organization. However,
its role in gene regulation remains largely unresolved. Here we report that the cohesin …

[HTML][HTML] Regulatory landscaping: how enhancer-promoter communication is sculpted in 3D

MI Robson, AR Ringel, S Mundlos - Molecular cell, 2019 - cell.com
During embryogenesis, precise gene transcription in space and time requires that distal
enhancers and promoters communicate by physical proximity within gene regulatory …

[HTML][HTML] Towards a unified model of SMC complex function

M Hassler, IA Shaltiel, CH Haering - Current Biology, 2018 - cell.com
Protein complexes built of structural maintenance of chromosomes (SMC) and kleisin
subunits, including cohesin, condensin and the Smc5/6 complex, are master organizers of …

[HTML][HTML] PRIMPOL-mediated adaptive response suppresses replication fork reversal in BRCA-deficient cells

A Quinet, S Tirman, J Jackson, S Šviković, D Lemaçon… - Molecular cell, 2020 - cell.com
Acute treatment with replication-stalling chemotherapeutics causes reversal of replication
forks. BRCA proteins protect reversed forks from nucleolytic degradation, and their loss …

TADs: Dynamic structures to create stable regulatory functions

JA da Costa-Nunes, D Noordermeer - Current Opinion in Structural Biology, 2023 - Elsevier
Mammalian chromosomes are organized at different length scales within the cell nucleus.
Topologically Associating Domains (TADs) are structural units of 3D genome organization …