Genome folding through loop extrusion by SMC complexes
IF Davidson, JM Peters - Nature reviews Molecular cell biology, 2021 - nature.com
Genomic DNA is folded into loops and topologically associating domains (TADs), which
serve important structural and regulatory roles. It has been proposed that these genomic …
serve important structural and regulatory roles. It has been proposed that these genomic …
[HTML][HTML] Mechanisms of enhancer action: the known and the unknown
A Panigrahi, BW O'Malley - Genome biology, 2021 - Springer
Differential gene expression mechanisms ensure cellular differentiation and plasticity to
shape ontogenetic and phylogenetic diversity of cell types. A key regulator of differential …
shape ontogenetic and phylogenetic diversity of cell types. A key regulator of differential …
Loop extrusion as a mechanism for formation of DNA damage repair foci
The repair of DNA double-strand breaks (DSBs) is essential for safeguarding genome
integrity. When a DSB forms, the PI3K-related ATM kinase rapidly triggers the establishment …
integrity. When a DSB forms, the PI3K-related ATM kinase rapidly triggers the establishment …
Organizational principles of 3D genome architecture
Studies of 3D chromatin organization have suggested that chromosomes are hierarchically
organized into large compartments composed of smaller domains called topologically …
organized into large compartments composed of smaller domains called topologically …
New insights into genome folding by loop extrusion from inducible degron technologies
Chromatin folds into dynamic loops that often span hundreds of kilobases and physically
wire distant loci together for gene regulation. These loops are continuously created …
wire distant loci together for gene regulation. These loops are continuously created …
WAPL maintains a cohesin loading cycle to preserve cell-type-specific distal gene regulation
NQ Liu, M Maresca, T van den Brand, L Braccioli… - Nature …, 2021 - nature.com
The cohesin complex has an essential role in maintaining genome organization. However,
its role in gene regulation remains largely unresolved. Here we report that the cohesin …
its role in gene regulation remains largely unresolved. Here we report that the cohesin …
[HTML][HTML] Regulatory landscaping: how enhancer-promoter communication is sculpted in 3D
During embryogenesis, precise gene transcription in space and time requires that distal
enhancers and promoters communicate by physical proximity within gene regulatory …
enhancers and promoters communicate by physical proximity within gene regulatory …
[HTML][HTML] Towards a unified model of SMC complex function
M Hassler, IA Shaltiel, CH Haering - Current Biology, 2018 - cell.com
Protein complexes built of structural maintenance of chromosomes (SMC) and kleisin
subunits, including cohesin, condensin and the Smc5/6 complex, are master organizers of …
subunits, including cohesin, condensin and the Smc5/6 complex, are master organizers of …
[HTML][HTML] PRIMPOL-mediated adaptive response suppresses replication fork reversal in BRCA-deficient cells
A Quinet, S Tirman, J Jackson, S Šviković, D Lemaçon… - Molecular cell, 2020 - cell.com
Acute treatment with replication-stalling chemotherapeutics causes reversal of replication
forks. BRCA proteins protect reversed forks from nucleolytic degradation, and their loss …
forks. BRCA proteins protect reversed forks from nucleolytic degradation, and their loss …
TADs: Dynamic structures to create stable regulatory functions
JA da Costa-Nunes, D Noordermeer - Current Opinion in Structural Biology, 2023 - Elsevier
Mammalian chromosomes are organized at different length scales within the cell nucleus.
Topologically Associating Domains (TADs) are structural units of 3D genome organization …
Topologically Associating Domains (TADs) are structural units of 3D genome organization …