Multidisciplinary approaches for studying rhizobium–legume symbioses

GC Dicenzo, M Zamani, A Checcucci… - Canadian Journal of …, 2019 - cdnsciencepub.com
The rhizobium–legume symbiosis is a major source of fixed nitrogen (ammonia) in the
biosphere. The potential for this process to increase agricultural yield while reducing the …

Physiology, genetics, and biochemistry of carbon metabolism in the alphaproteobacterium Sinorhizobium meliloti

BA Geddes, IJ Oresnik - Canadian journal of microbiology, 2014 - cdnsciencepub.com
A large proportion of genes within a genome encode proteins that play a role in metabolism.
The Alphaproteobacteria are a ubiquitous group of bacteria that play a major role in a …

Cross talk between ABC transporter m RNA s via a target m RNA‐derived sponge of the G cv B small RNA

M Miyakoshi, Y Chao, J Vogel - The EMBO journal, 2015 - embopress.org
There is an expanding list of examples by which one mRNA can posttranscriptionally
influence the expression of others. This can involve RNA sponges that sequester regulatory …

Origin, evolution, and loss of bacterial small RNAs

HA Dutcher, R Raghavan - … with RNA in Bacteria and Archaea, 2018 - Wiley Online Library
As our understanding of the transcriptional landscape of bacteria continues to expand, it has
become clear that noncoding small RNAs (sRNAs) play a pivotal regulatory role (1–3) …

Genome-wide profiling of Hfq-binding RNAs uncovers extensive post-transcriptional rewiring of major stress response and symbiotic regulons in Sinorhizobium …

O Torres-Quesada, J Reinkensmeier, JP Schlüter… - RNA biology, 2014 - Taylor & Francis
The RNA chaperone Hfq is a global post-transcriptional regulator in bacteria. Here, we used
RNAseq to analyze RNA populations from the legume symbiont Sinorhizobium meliloti that …

Unraveling the small proteome of the plant symbiont Sinorhizobium meliloti by ribosome profiling and proteogenomics

L Hadjeras, B Heiniger, S Maaß, R Scheuer… - …, 2023 - academic.oup.com
The soil-dwelling plant symbiont Sinorhizobium meliloti is a major model organism of
Alphaproteobacteria. Despite numerous detailed OMICS studies, information about small …

Riboregulation in bacteria: From general principles to novel mechanisms of the trp attenuator and its sRNA and peptide products

E Evguenieva‐Hackenberg - Wiley Interdisciplinary Reviews …, 2022 - Wiley Online Library
Gene expression strategies ensuring bacterial survival and competitiveness rely on cis‐and
trans‐acting RNA‐regulators (riboregulators). Among the cis‐acting riboregulators are …

A stress-induced small RNA modulates alpha-rhizobial cell cycle progression

M Robledo, B Frage, PR Wright, A Becker - PLoS genetics, 2015 - journals.plos.org
Mechanisms adjusting replication initiation and cell cycle progression in response to
environmental conditions are crucial for microbial survival. Functional characterization of the …

Transcription attenuation-derived small RNA rnTrpL regulates tryptophan biosynthesis gene expression in trans

H Melior, S Li, R Madhugiri, M Stötzel… - Nucleic acids …, 2019 - academic.oup.com
Ribosome-mediated transcription attenuation is a basic posttranscriptional regulation
mechanism in bacteria. Liberated attenuator RNAs arising in this process are generally …

Small RNA‐based regulation of bacterial quorum sensing and biofilm formation

SL Svenningsen - Regulating with RNA in Bacteria and …, 2018 - Wiley Online Library
Bacteria use the production, release, and detection of extracellular chemical signaling
molecules called autoinducers (AIs) to regulate gene expression at the population level, a …