Changes in genome architecture and transcriptional dynamics progress independently of sensory experience during post-natal brain development
Both transcription and three-dimensional (3D) architecture of the mammalian genome play
critical roles in neurodevelopment and its disorders. However, 3D genome structures of …
critical roles in neurodevelopment and its disorders. However, 3D genome structures of …
[HTML][HTML] Mapping transcriptomic vector fields of single cells
Summary Single-cell (sc) RNA-seq, together with RNA velocity and metabolic labeling,
reveals cellular states and transitions at unprecedented resolution. Fully exploiting these …
reveals cellular states and transitions at unprecedented resolution. Fully exploiting these …
[HTML][HTML] The pseudogenes of eukaryotic translation elongation factors (EEFs): Role in cancer and other human diseases
L Cristiano - Genes & Diseases, 2022 - Elsevier
The eukaryotic translation elongation factors (EEFs), ie EEF1A1, EEF1A2, EEF1B2, EEF1D,
EEF1G, EEF1E1 and EEF2, are coding-genes that play a central role in the elongation step …
EEF1G, EEF1E1 and EEF2, are coding-genes that play a central role in the elongation step …
A single-cell atlas of adult Drosophila ovary identifies transcriptional programs and somatic cell lineage regulating oogenesis
Oogenesis is a complex developmental process that involves spatiotemporally regulated
coordination between the germline and supporting, somatic cell populations. This process …
coordination between the germline and supporting, somatic cell populations. This process …
Beyond single cells: microfluidics empowering multiomics analysis
Single-cell multiomics technologies empower simultaneous measurement of multiple types
of molecules within individual cells, providing a more profound comprehension compared …
of molecules within individual cells, providing a more profound comprehension compared …
Highly sensitive single-cell chromatin accessibility assay and transcriptome coassay with METATAC
Recent advances in single-cell assay for transposase accessible chromatin using
sequencing (scATAC-seq) and its coassays have transformed the field of single-cell …
sequencing (scATAC-seq) and its coassays have transformed the field of single-cell …
Dynamics of single-cell protein covariation during epithelial–mesenchymal transition
S Khan, R Conover, AR Asthagiri… - Journal of Proteome …, 2024 - ACS Publications
Physiological processes, such as the epithelial–mesenchymal transition (EMT), are
mediated by changes in protein interactions. These changes may be better reflected in …
mediated by changes in protein interactions. These changes may be better reflected in …
[HTML][HTML] Spatial transcriptomic patterns underlying amyloid-β and tau pathology are associated with cognitive dysfunction in Alzheimer's disease
Amyloid-β (Aβ) and tau proteins accumulate within distinct neuronal systems in Alzheimer's
disease (AD). Although it is not clear why certain brain regions are more vulnerable to Aβ …
disease (AD). Although it is not clear why certain brain regions are more vulnerable to Aβ …
Correlated Protein Modules Revealing Functional Coordination of Interacting Proteins Are Detected by Single-Cell Proteomics
M Hu, Y Zhang, Y Yuan, W Ma, Y Zheng… - The Journal of …, 2023 - ACS Publications
Single-cell proteomics has attracted a lot of attention in recent years because it offers more
functional relevance than single-cell transcriptomics. However, most work to date has …
functional relevance than single-cell transcriptomics. However, most work to date has …
Machine Learning-Enhanced Extraction of Biomarkers for High-Grade Serous Ovarian Cancer from Proteomics Data
S De Silva, A Alli-Shaik, J Gunaratne - Scientific Data, 2024 - nature.com
Comprehensive biomedical proteomic datasets are accumulating exponentially, warranting
robust analytics to deconvolute them for identifying novel biological insights. Here, we report …
robust analytics to deconvolute them for identifying novel biological insights. Here, we report …