Minimum information about an uncultivated virus genome (MIUViG)
We present an extension of the Minimum Information about any (x) Sequence (MIxS)
standard for reporting sequences of uncultivated virus genomes. Minimum Information about …
standard for reporting sequences of uncultivated virus genomes. Minimum Information about …
Exact sequence variants should replace operational taxonomic units in marker-gene data analysis
Recent advances have made it possible to analyze high-throughput marker-gene
sequencing data without resorting to the customary construction of molecular operational …
sequencing data without resorting to the customary construction of molecular operational …
Phage puppet masters of the marine microbial realm
Viruses numerically dominate our oceans; however, we have only just begun to document
the diversity, host range and infection dynamics of marine viruses, as well as the subsequent …
the diversity, host range and infection dynamics of marine viruses, as well as the subsequent …
Ranking the biases: The choice of OTUs vs. ASVs in 16S rRNA amplicon data analysis has stronger effects on diversity measures than rarefaction and OTU identity …
Advances in the analysis of amplicon sequence datasets have introduced a methodological
shift in how research teams investigate microbial biodiversity, away from sequence identity …
shift in how research teams investigate microbial biodiversity, away from sequence identity …
Alpha-, beta-, and gamma-diversity of bacteria varies across habitats
KE Walters, JBH Martiny - PLoS One, 2020 - journals.plos.org
Bacteria are essential parts of ecosystems and are the most diverse organisms on the
planet. Yet, we still do not know which habitats support the highest diversity of bacteria …
planet. Yet, we still do not know which habitats support the highest diversity of bacteria …
Broadscale ecological patterns are robust to use of exact sequence variants versus operational taxonomic units
SI Glassman, JBH Martiny - MSphere, 2018 - Am Soc Microbiol
Recent discussion focuses on the best method for delineating microbial taxa, based on
either exact sequence variants (ESVs) or traditional operational taxonomic units (OTUs) of …
either exact sequence variants (ESVs) or traditional operational taxonomic units (OTUs) of …
Droplet-based high-throughput cultivation for accurate screening of antibiotic resistant gut microbes
Traditional cultivation approaches in microbiology are labor-intensive, low-throughput, and
yield biased sampling of environmental microbes due to ecological and evolutionary factors …
yield biased sampling of environmental microbes due to ecological and evolutionary factors …
The microbial rare biosphere: current concepts, methods and ecological principles
Our ability to describe the highly diverse pool of low abundance populations present in
natural microbial communities is increasing at an unprecedented pace. Yet we currently lack …
natural microbial communities is increasing at an unprecedented pace. Yet we currently lack …
Microdiversity ensures the maintenance of functional microbial communities under changing environmental conditions
Microdiversity can lead to different ecotypes within the same species. These are assumed to
provide stability in time and space to those species. However, the role of microdiversity in …
provide stability in time and space to those species. However, the role of microdiversity in …
Microbial assembly, interaction, functioning, activity and diversification: a review derived from community compositional data
Microorganisms play crucial roles in maintaining ecosystem stability. The last two decades
have witnessed an upsurge in studies on marine microbial community composition using …
have witnessed an upsurge in studies on marine microbial community composition using …