From microbiome composition to functional engineering, one step at a time

SD Burz, S Causevic, A Dal Co… - Microbiology and …, 2023 - Am Soc Microbiol
Communities of microorganisms (microbiota) are present in all habitats on Earth and are
relevant for agriculture, health, and climate. Deciphering the mechanisms that determine …

Using community ecology theory and computational microbiome methods to study human milk as a biological system

L Shenhav, MB Azad - Msystems, 2022 - Am Soc Microbiol
Human milk is a complex and dynamic biological system that has evolved to optimally
nourish and protect human infants. Yet, according to a recent priority-setting review,“our …

Metataxonomics, metagenomics and metabolomics analysis of the influence of temperature modification in full-scale anaerobic digesters

F Puig-Castellví, C Midoux, A Guenne, D Conteau… - Bioresource …, 2022 - Elsevier
Full-scale anaerobic digesters' performance is regulated by modifying their operational
conditions, but little is known about how these modifications affect their microbiome. In this …

Retooling microbiome engineering for a sustainable future

CE Lawson - Msystems, 2021 - Am Soc Microbiol
Microbial communities (microbiomes) have been harnessed in biotechnology applications
such as wastewater treatment and bioremediation for over a century. Traditionally …

Bacterial and archaeal DNA from lake sediments

A Vuillemin, MJL Coolen, J Kallmeyer… - … Change Using Lake …, 2023 - Springer
General microbial patterns of biogeography can be established based on sedimentary DNA
(sedDNA) retrieved from diverse inland aquatic ecosystems, provided that certain variable …

[PDF][PDF] 2.2. Study 2: Multi-Meta-Omics in soils: What to learn about the regulation of the basic C metabolism under shifts in habitat element stoichiometry.

A Breidenbach, K Mason-Jones, S Wende… - Soil Multi-Meta-Omics …, 2024 - d-nb.info
Soil microbial communities play a key role in mineralizing carbon (C) while building up
biomass, the basis of C sequestration, by replicative and storage growth. Understanding the …