Where the Wild Molecules Are: Engineering the spatial distribution of signaling molecules

X Zhu, E Neu, WW Wong - Current Opinion in Biomedical Engineering, 2024 - Elsevier
The spatial distribution of the signaling molecules that mediate cell-cell communication and
pattern formation is an important consideration for natural and engineered multicellular …

Learning optimal integration of spatial and temporal information in noisy chemotaxis

A Alonso, JB Kirkegaard - PNAS Nexus, 2024 - academic.oup.com
We investigate the boundary between chemotaxis driven by spatial estimation of gradients
and chemotaxis driven by temporal estimation. While it is well known that spatial chemotaxis …

Eukaryotic chemotaxis under periodic stimulation shows temporal gradient dependence

R Karmakar, A Karanam, MH Tang, WJ Rappel - Physical Review Letters, 2024 - APS
When cells of the social amoeba Dictyostelium discoideum are starved of nutrients they start
to synthesize and secrete the chemical messenger and chemoattractant cyclic adenosine …

Cells function as a ternary logic gate to decide migration direction under integrated chemical and fluidic cues

H Moon, S Saha, A Mugler, B Han - Lab on a Chip, 2023 - pubs.rsc.org
Cells sense various environmental cues and subsequently process intracellular signals to
decide their migration direction in many physiological and pathological processes. Although …

Characteristics of cell motility during cell collision

Y Ma, N Li, W Chen - Chinese Physics B, 2024 - iopscience.iop.org
Quantitative examination of cellular motion and intercellullar interactions possesses
substantial relevance for both biology and medicine. However, the effects of intercellular …

Computational model of primitive nervous system controlling chemotaxis in early multicellular heterotrophs

EO Vasilenko, A Sinitskiy - bioRxiv, 2024 - biorxiv.org
This paper presents a model to study a hypothetical role of a simple nervous systems in
chemotaxis in early multicellular heterotrophs. The model views the organism as a network …

Step, dip, and bell-shape traveling waves in a (2+ 1)-chemotaxis model with traction and long-range diffusion

W Domgno Kuipou, D Belobo Belobo… - The European Physical …, 2022 - Springer
In this paper, a new (2+ 1)-dimensional chemotaxis model is introduced, the focus being the
understanding of influences of cooperative mechanisms from traction forces, long-range …

Signaling Pathways in Living Systems

AR Karanam - 2024 - search.proquest.com
UNIVERSITY OF CALIFORNIA SAN DIEGO Signaling Pathways in Living Systems A
dissertation submitted in partial satisfaction of the Page 1 UNIVERSITY OF CALIFORNIA SAN …

Boolean modelling in plant biology

A Karanam, WJ Rappel - Quantitative Plant Biology, 2022 - cambridge.org
Signalling and genetic networks underlie most biological processes and are often complex,
containing many highly connected components. Modelling these networks can provide …

[图书][B] Applications of Mathematical Physics to Quantitative Biology

TJ Tyree - 2023 - search.proquest.com
Interdisciplinary investigation has the potential to advance all fields involved. In this
dissertation, three distinct fields of Quantitative Biology are discussed and advanced …