[HTML][HTML] Genome evolution in fungal plant pathogens: looking beyond the two-speed genome model

DE Torres, U Oggenfuss, D Croll, MF Seidl - Fungal Biology Reviews, 2020 - Elsevier
The interaction of pathogens with their hosts creates strong reciprocal selection pressures.
Pathogens often deploy an arsenal of small proteins called effectors that manipulate the …

The dynamic fungal genome: polyploidy, aneuploidy and copy number variation in response to stress

P Vande Zande, X Zhou… - Annual review of …, 2023 - annualreviews.org
Fungal species have dynamic genomes and often exhibit genomic plasticity in response to
stress. This genome plasticity often comes with phenotypic consequences that affect fitness …

A 19-isolate reference-quality global pangenome for the fungal wheat pathogen Zymoseptoria tritici

T Badet, U Oggenfuss, L Abraham, BA McDonald… - BMC biology, 2020 - Springer
Background The gene content of a species largely governs its ecological interactions and
adaptive potential. A species is therefore defined by both core genes shared between all …

Recent transposable element bursts are associated with the proximity to genes in a fungal plant pathogen

U Oggenfuss, D Croll - PLoS Pathogens, 2023 - journals.plos.org
The activity of transposable elements (TEs) contributes significantly to pathogen genome
evolution. TEs often destabilize genome integrity but may also confer adaptive variation in …

Major proliferation of transposable elements shaped the genome of the soybean rust pathogen Phakopsora pachyrhizi

YK Gupta, FC Marcelino-Guimarães, C Lorrain… - Nature …, 2023 - nature.com
With> 7000 species the order of rust fungi has a disproportionately large impact on
agriculture, horticulture, forestry and foreign ecosystems. The infectious spores are typically …

A devil's bargain with transposable elements in plant pathogens

S Fouché, U Oggenfuss, E Chanclud, D Croll - Trends in Genetics, 2022 - cell.com
Transposable elements (TEs) spread in genomes through self-copying mechanisms and are
a major cause of genome expansions. Plant pathogens have finely tuned the expression of …

A dispensable paralog of succinate dehydrogenase subunit C mediates standing resistance towards a subclass of SDHI fungicides in Zymoseptoria tritici

D Steinhauer, M Salat, R Frey, A Mosbach… - PLoS …, 2019 - journals.plos.org
Succinate dehydrogenase inhibitor (SDHI) fungicides are widely used for the control of a
broad range of fungal diseases. This has been the most rapidly expanding fungicide group …

Retrotransposons as pathogenicity factors of the plant pathogenic fungus Botrytis cinerea

A Porquier, C Tisserant, F Salinas, C Glassl, L Wange… - Genome biology, 2021 - Springer
Background Retrotransposons are genetic elements inducing mutations in all domains of
life. Despite their detrimental effect, retrotransposons can become temporarily active during …

Combined pangenomics and transcriptomics reveals core and redundant virulence processes in a rapidly evolving fungal plant pathogen

H Chen, R King, D Smith, C Bayon, T Ashfield… - BMC biology, 2023 - Springer
Background Studying genomic variation in rapidly evolving pathogens potentially enables
identification of genes supporting their “core biology”, being present, functional and …

Genomic rearrangements generate hypervariable mini-chromosomes in host-specific isolates of the blast fungus

T Langner, A Harant, LB Gomez-Luciano… - PLoS …, 2021 - journals.plos.org
Supernumerary mini-chromosomes–a unique type of genomic structural variation–have
been implicated in the emergence of virulence traits in plant pathogenic fungi. However, the …