[HTML][HTML] Sugar-coated killer: serotype 3 pneumococcal disease

JN Luck, H Tettelin, CJ Orihuela - Frontiers in Cellular and Infection …, 2020 - frontiersin.org
Capsular polysaccharide (CPS), which surrounds the bacteria, is one of the most significant
and multifaceted contributors to Streptococcus pneumoniae virulence. Capsule prevents …

[HTML][HTML] Producing polished prokaryotic pangenomes with the Panaroo pipeline

G Tonkin-Hill, N MacAlasdair, C Ruis, A Weimann… - Genome biology, 2020 - Springer
Population-level comparisons of prokaryotic genomes must take into account the substantial
differences in gene content resulting from horizontal gene transfer, gene duplication and …

[HTML][HTML] Pneumococcal lineages associated with serotype replacement and antibiotic resistance in childhood invasive pneumococcal disease in the post-PCV13 era …

SW Lo, RA Gladstone, AJ Van Tonder… - The Lancet Infectious …, 2019 - thelancet.com
Background Invasive pneumococcal disease remains an important health priority owing to
increasing disease incidence caused by pneumococci expressing non-vaccine serotypes …

[HTML][HTML] A bacterial pan-genome makes gene essentiality strain-dependent and evolvable

F Rosconi, E Rudmann, J Li, D Surujon, J Anthony… - Nature …, 2022 - nature.com
Many bacterial species are represented by a pan-genome, whose genetic repertoire far
outstrips that of any single bacterial genome. Here we investigate how a bacterial pan …

[HTML][HTML] Global genomic epidemiology of Streptococcus pyogenes

MG Jespersen, JA Lacey, SYC Tong… - Infection, Genetics and …, 2020 - Elsevier
Streptococcus pyogenes is one of the Top 10 human infectious disease killers worldwide
causing a range of clinical manifestations in humans. Colonizing a range of ecological …

[HTML][HTML] Effect of pneumococcal conjugate vaccines and SARS-CoV-2 on antimicrobial resistance and the emergence of Streptococcus pneumoniae serotypes with …

J Sempere, M Llamosí, BL Ruiz, I Del Río… - The Lancet …, 2022 - thelancet.com
Background Epidemiological studies are necessary to explore the effect of current
pneumococcal conjugate vaccines (PCVs) against antibiotic resistance, including the rise of …

[HTML][HTML] Pneumococcal within-host diversity during colonization, transmission and treatment

G Tonkin-Hill, C Ling, C Chaguza, SJ Salter… - Nature …, 2022 - nature.com
Characterizing the genetic diversity of pathogens within the host promises to greatly improve
surveillance and reconstruction of transmission chains. For bacteria, it also informs our …

Improved prediction of bacterial genotype-phenotype associations using interpretable pangenome-spanning regressions

JA Lees, TT Mai, M Galardini, NE Wheeler… - MBio, 2020 - Am Soc Microbiol
Discovery of genetic variants underlying bacterial phenotypes and the prediction of
phenotypes such as antibiotic resistance are fundamental tasks in bacterial genomics …

[HTML][HTML] Emergence of a multidrug-resistant and virulent Streptococcus pneumoniae lineage mediates serotype replacement after PCV13: an international whole …

SW Lo, K Mellor, R Cohen, AR Alonso, S Belman… - The Lancet …, 2022 - thelancet.com
Background Serotype 24F is one of the emerging pneumococcal serotypes after the
introduction of pneumococcal conjugate vaccine (PCV). We aimed to identify lineages …

[PDF][PDF] Dysregulation of Streptococcus pneumoniae zinc homeostasis breaks ampicillin resistance in a pneumonia infection model

EB Brazel, A Tan, SL Neville, AR Iverson… - Cell reports, 2022 - cell.com
Streptococcus pneumoniae is the primary cause of community-acquired bacterial
pneumonia with rates of penicillin and multidrug-resistance exceeding 80% and 40 …