Gene regulation and speciation

KL Mack, MW Nachman - Trends in Genetics, 2017 - cell.com
Understanding the genetic architecture of speciation is a major goal in evolutionary biology.
Hybrid dysfunction is thought to arise most commonly through negative interactions between …

[HTML][HTML] From genotypes to organisms: State-of-the-art and perspectives of a cornerstone in evolutionary dynamics

S Manrubia, JA Cuesta, J Aguirre, SE Ahnert… - Physics of Life …, 2021 - Elsevier
Understanding how genotypes map onto phenotypes, fitness, and eventually organisms is
arguably the next major missing piece in a fully predictive theory of evolution. We refer to this …

Fisher's Geometric Model as a Tool to Study Speciation

H Schneemann, B De Sanctis… - Cold Spring Harbor …, 2024 - cshperspectives.cshlp.org
Interactions between alleles and across environments play an important role in the fitness of
hybrids and are at the heart of the speciation process. Fitness landscapes capture these …

Multi-locus interactions and the build-up of reproductive isolation

I Satokangas, SH Martin… - … of the Royal …, 2020 - royalsocietypublishing.org
All genes interact with other genes, and their additive effects and epistatic interactions affect
an organism's phenotype and fitness. Recent theoretical and empirical work has advanced …

Biophysics and population size constrains speciation in an evolutionary model of developmental system drift

BS Khatri, RA Goldstein - PLoS computational biology, 2019 - journals.plos.org
Developmental system drift is a likely mechanism for the origin of hybrid incompatibilities
between closely related species. We examine here the detailed mechanistic basis of hybrid …

Spiraling complexity: a test of the snowball effect in a computational model of RNA folding

A Kalirad, RBR Azevedo - Genetics, 2017 - academic.oup.com
The snowball hypothesis suggests that the number of genetic incompatibilities between two
populations will accumulate faster than linearly as they diverge... Genetic incompatibilities …

Environment-dependent epistasis increases phenotypic diversity in gene regulatory networks

F Baier, F Gauye, R Perez-Carrasco, JL Payne… - Science …, 2023 - science.org
Mutations to gene regulatory networks can be maladaptive or a source of evolutionary
novelty. Epistasis confounds our understanding of how mutations affect the expression …

Genetic drift promotes and recombination hinders speciation on holey fitness landscapes

A Kalirad, CL Burch, RBR Azevedo - PLoS Genetics, 2024 - journals.plos.org
Dobzhansky and Muller proposed a general mechanism through which microevolution, the
substitution of alleles within populations, can cause the evolution of reproductive isolation …

A computational investigation of cis-gene regulation in evolution

M Mahmud, M Bekele, N Behera - Theory in Biosciences, 2023 - Springer
In biological processes involving gene networks, genes regulate other genes that determine
the phenotypic traits. Gene regulation plays an important role in evolutionary dynamics. In a …

Population structure promotes the evolution of costly sex in artificial gene networks

AOB Whitlock, RBR Azevedo, CL Burch - Evolution, 2019 - academic.oup.com
We build on previous observations that Hill–Robertson interference generates an advantage
of sex that, in structured populations, can be large enough to explain the evolutionary …