[HTML][HTML] Deciphering photoreceptors through atomistic modeling from light absorption to conformational response
In this review, we discuss the successes and challenges of the atomistic modeling of
photoreceptors. Throughout our presentation, we integrate explanations of the primary …
photoreceptors. Throughout our presentation, we integrate explanations of the primary …
Condensed Matter Systems Exposed to Radiation: Multiscale Theory, Simulations, and Experiment
This roadmap reviews the new, highly interdisciplinary research field studying the behavior
of condensed matter systems exposed to radiation. The Review highlights several recent …
of condensed matter systems exposed to radiation. The Review highlights several recent …
Unraveling Water Solvation Effects with Quantum Mechanics/Molecular Mechanics Semiclassical Vibrational Spectroscopy: The Case of Thymidine
We introduce a quantum mechanics/molecular mechanics semiclassical method for studying
the solvation process of molecules in water at the nuclear quantum mechanical level with …
the solvation process of molecules in water at the nuclear quantum mechanical level with …
A Quasi Time-Reversible Scheme Based on Density Matrix Extrapolation on the Grassmann Manifold for Born–Oppenheimer Molecular Dynamics
This Letter introduces the so-called Quasi Time-Reversible scheme based on Grassmann
extrapolation (QTR G-Ext) of density matrices for an accurate calculation of initial guesses in …
extrapolation (QTR G-Ext) of density matrices for an accurate calculation of initial guesses in …
Taming the third order cumulant approximation to linear optical spectroscopy
L Allan, TJ Zuehlsdorff - The Journal of Chemical Physics, 2024 - pubs.aip.org
The second order cumulant method offers a promising pathway to predicting optical
properties in condensed phase systems. It allows for the computation of linear absorption …
properties in condensed phase systems. It allows for the computation of linear absorption …
Importance of Polarizable Embedding for Computing Optical Rotation: The Case of Camphor in Ethanol
M Nottoli, E Vanich, L Cupellini… - The Journal of …, 2024 - ACS Publications
Solvation effects on optical rotation are notoriously challenging to model for computational
chemistry, as the specific rotatory power of a molecule can vary wildly going from apolar to …
chemistry, as the specific rotatory power of a molecule can vary wildly going from apolar to …
The OpenMMPol library for polarizable QM/MM calculations of properties and dynamics
We present a new library designed to provide a simple and straightforward way to
implement QM/AMOEBA (Atomic Multipole Optimized Energetics for Biomolecular …
implement QM/AMOEBA (Atomic Multipole Optimized Energetics for Biomolecular …
Seamless integration of GEM, a density based-force field, for QM/MM simulations via LICHEM, Psi4, and Tinker-HP
J Nochebuena, AC Simmonett… - The Journal of Chemical …, 2024 - pubs.aip.org
Hybrid quantum mechanics/molecular mechanics (QM/MM) simulations have become an
essential tool in computational chemistry, particularly for analyzing complex biological and …
essential tool in computational chemistry, particularly for analyzing complex biological and …
Modeling UV/Vis Absorption Spectra of Food Colorants in Solution: Anthocyanins and Curcumin as Case Studies
S Gómez, P Lafiosca, T Giovannini - Molecules, 2024 - mdpi.com
We present a comprehensive computational study of UV/Vis absorption spectra of significant
food colorants, specifically anthocyanins and curcumin tautomers, dissolved in polar protic …
food colorants, specifically anthocyanins and curcumin tautomers, dissolved in polar protic …