SCENIC+: single-cell multiomic inference of enhancers and gene regulatory networks
C Bravo González-Blas, S De Winter, G Hulselmans… - Nature …, 2023 - nature.com
Joint profiling of chromatin accessibility and gene expression in individual cells provides an
opportunity to decipher enhancer-driven gene regulatory networks (GRNs). Here we present …
opportunity to decipher enhancer-driven gene regulatory networks (GRNs). Here we present …
Potent and uniform fetal hemoglobin induction via base editing
Inducing fetal hemoglobin (HbF) in red blood cells can alleviate β-thalassemia and sickle
cell disease. We compared five strategies in CD34+ hematopoietic stem and progenitor …
cell disease. We compared five strategies in CD34+ hematopoietic stem and progenitor …
Mechanisms of binding specificity among bHLH transcription factors
The transcriptome of every cell is orchestrated by the complex network of interaction
between transcription factors (TFs) and their binding sites on DNA. Disruption of this network …
between transcription factors (TFs) and their binding sites on DNA. Disruption of this network …
A genome-wide association study of blood cell morphology identifies cellular proteins implicated in disease aetiology
Blood cells contain functionally important intracellular structures, such as granules, critical to
immunity and thrombosis. Quantitative variation in these structures has not been subjected …
immunity and thrombosis. Quantitative variation in these structures has not been subjected …
Comprehensive proteomic analysis of human erythropoiesis
EF Gautier, S Ducamp, M Leduc, V Salnot… - Cell reports, 2016 - cell.com
Mass spectrometry-based proteomics now enables the absolute quantification of thousands
of proteins in individual cell types. We used this technology to analyze the dynamic …
of proteins in individual cell types. We used this technology to analyze the dynamic …
Evolution and new frontiers of histology in bio‐medical research
M Mazzarini, M Falchi, D Bani… - … research and technique, 2021 - Wiley Online Library
Histology refers to the study of the morphology of cells within their natural tissue
environment. As a bio‐medical discipline, it dates back to the development of first …
environment. As a bio‐medical discipline, it dates back to the development of first …
Gene editing without ex vivo culture evades genotoxicity in human hematopoietic stem cells
Gene editing the BCL11A erythroid enhancer is a validated approach to fetal hemoglobin
(HbF) induction for β-hemoglobinopathy therapy, though heterogeneity in edit allele …
(HbF) induction for β-hemoglobinopathy therapy, though heterogeneity in edit allele …
HDAC1 and PRC2 mediate combinatorial control in SPI1/PU. 1-dependent gene repression in murine erythroleukaemia
S Gregoricchio, L Polit, M Esposito… - Nucleic Acids …, 2022 - academic.oup.com
Although originally described as transcriptional activator, SPI1/PU. 1, a major player in
haematopoiesis whose alterations are associated with haematological malignancies, has …
haematopoiesis whose alterations are associated with haematological malignancies, has …
Nascent transcription reveals regulatory changes in extremophile fishes inhabiting hydrogen sulfide-rich environments
BW Perry, KL McGowan… - … of the Royal …, 2024 - royalsocietypublishing.org
Regulating transcription allows organisms to respond to their environment, both within a
single generation (plasticity) and across generations (adaptation). We examined …
single generation (plasticity) and across generations (adaptation). We examined …
Exposure to hypoxia causes stress erythropoiesis and downregulates immune response genes in spleen of mice
H Wang, D Liu, P Song, F Jiang, X Chi, T Zhang - BMC genomics, 2021 - Springer
Background The spleen is the largest secondary lymphoid organ and the main site where
stress erythropoiesis occurs. It is known that hypoxia triggers the expansion of erythroid …
stress erythropoiesis occurs. It is known that hypoxia triggers the expansion of erythroid …