New insights into the regulation of leaf senescence in Arabidopsis

J Kim, JH Kim, JI Lyu, HR Woo… - Journal of Experimental …, 2018 - academic.oup.com
Plants undergo developmental changes throughout their life history. Senescence, the final
stage in the life history of a leaf, is an important and unique developmental process whereby …

Association mapping in plants in the post-GWAS genomics era

PK Gupta, PL Kulwal, V Jaiswal - Advances in genetics, 2019 - Elsevier
With the availability of DNA-based molecular markers during early 1980s and that of
sophisticated statistical tools in late 1980s and later, it became possible to identify genomic …

Massive haplotypes underlie ecotypic differentiation in sunflowers

M Todesco, GL Owens, N Bercovich, JS Légaré… - Nature, 2020 - nature.com
Species often include multiple ecotypes that are adapted to different environments.
However, it is unclear how ecotypes arise and how their distinctive combinations of adaptive …

Crop breeding for a changing climate: Integrating phenomics and genomics with bioinformatics

JI Marsh, H Hu, M Gill, J Batley, D Edwards - Theoretical and Applied …, 2021 - Springer
Key message Safeguarding crop yields in a changing climate requires bioinformatics
advances in harnessing data from vast phenomics and genomics datasets to translate …

CropGS-Hub: a comprehensive database of genotype and phenotype resources for genomic prediction in major crops

J Chen, C Tan, M Zhu, C Zhang, Z Wang… - Nucleic Acids …, 2024 - academic.oup.com
The explosive amount of multi-omics data has brought a paradigm shift both in academic
research and further application in life science. However, managing and reusing the …

The AraGWAS Catalog: a curated and standardized Arabidopsis thaliana GWAS catalog

M Togninalli, Ü Seren, D Meng, J Fitz… - Nucleic acids …, 2018 - academic.oup.com
The abundance of high-quality genotype and phenotype data for the model organism
Arabidopsis thaliana enables scientists to study the genetic architecture of many complex …

AraPheno and the AraGWAS Catalog 2020: a major database update including RNA-Seq and knockout mutation data for Arabidopsis thaliana

M Togninalli, Ü Seren, JA Freudenthal… - Nucleic acids …, 2020 - academic.oup.com
Genome-wide association studies (GWAS) are integral for studying genotype-phenotype
relationships and gaining a deeper understanding of the genetic architecture underlying trait …

Phenotypic and genome-wide association with the local environment of Arabidopsis

Á Ferrero-Serrano, SM Assmann - Nature Ecology & Evolution, 2019 - nature.com
The environment imposes critical selective forces on all living organisms, and the sessile
nature of plants makes them particularly useful for investigating the relationship between …

Adaptive diversification of growth allometry in the plant Arabidopsis thaliana

F Vasseur, M Exposito-Alonso… - Proceedings of the …, 2018 - National Acad Sciences
Seed plants vary tremendously in size and morphology; however, variation and covariation
in plant traits may be governed, at least in part, by universal biophysical laws and biological …

Identification of novel seed longevity genes related to oxidative stress and seed coat by genome‐wide association studies and reverse genetics

J Renard, R Niñoles… - Plant, cell & …, 2020 - Wiley Online Library
Seed longevity is a polygenic trait of relevance for agriculture and for understanding the
effect of environment on the ageing of biological systems. In order to identify novel longevity …