Graph representation learning in biomedicine and healthcare
Networks—or graphs—are universal descriptors of systems of interacting elements. In
biomedicine and healthcare, they can represent, for example, molecular interactions …
biomedicine and healthcare, they can represent, for example, molecular interactions …
RNA-binding proteins in human genetic disease
RNA-binding proteins (RBPs) are critical effectors of gene expression, and as such their
malfunction underlies the origin of many diseases. RBPs can recognize hundreds of …
malfunction underlies the origin of many diseases. RBPs can recognize hundreds of …
HMDB 5.0: the human metabolome database for 2022
DS Wishart, AC Guo, E Oler, F Wang… - Nucleic acids …, 2022 - academic.oup.com
Abstract The Human Metabolome Database or HMDB (https://hmdb. ca) has been providing
comprehensive reference information about human metabolites and their associated …
comprehensive reference information about human metabolites and their associated …
OrthoDB v11: annotation of orthologs in the widest sampling of organismal diversity
D Kuznetsov, F Tegenfeldt, M Manni… - Nucleic Acids …, 2023 - academic.oup.com
OrthoDB provides evolutionary and functional annotations of genes in a diverse sampling of
eukaryotes, prokaryotes, and viruses. Genomics continues to accelerate our exploration of …
eukaryotes, prokaryotes, and viruses. Genomics continues to accelerate our exploration of …
Highly accurate protein structure prediction for the human proteome
Protein structures can provide invaluable information, both for reasoning about biological
processes and for enabling interventions such as structure-based drug development or …
processes and for enabling interventions such as structure-based drug development or …
[PDF][PDF] clusterProfiler 4.0: A universal enrichment tool for interpreting omics data
T Wu, E Hu, S Xu, M Chen, P Guo, Z Dai, T Feng… - The innovation, 2021 - cell.com
Functional enrichment analysis is pivotal for interpreting high-throughput omics data in life
science. It is crucial for this type of tool to use the latest annotation databases for as many …
science. It is crucial for this type of tool to use the latest annotation databases for as many …
Acute inflammatory response via neutrophil activation protects against the development of chronic pain
M Parisien, LV Lima, C Dagostino… - Science translational …, 2022 - science.org
The transition from acute to chronic pain is critically important but not well understood. Here,
we investigated the pathophysiological mechanisms underlying the transition from acute to …
we investigated the pathophysiological mechanisms underlying the transition from acute to …
VEuPathDB: the eukaryotic pathogen, vector and host bioinformatics resource center
B Amos, C Aurrecoechea, M Barba… - Nucleic Acids …, 2022 - academic.oup.com
Abstract The Eukaryotic Pathogen, Vector and Host Informatics Resource (VEuPathDB,
https://veupathdb. org) represents the 2019 merger of VectorBase with the EuPathDB …
https://veupathdb. org) represents the 2019 merger of VectorBase with the EuPathDB …
Single-cell dissection of the human brain vasculature
Despite the importance of the cerebrovasculature in maintaining normal brain physiology
and in understanding neurodegeneration and drug delivery to the central nervous system …
and in understanding neurodegeneration and drug delivery to the central nervous system …
Gene set knowledge discovery with Enrichr
Z Xie, A Bailey, MV Kuleshov, DJB Clarke… - Current …, 2021 - Wiley Online Library
Profiling samples from patients, tissues, and cells with genomics, transcriptomics,
epigenomics, proteomics, and metabolomics ultimately produces lists of genes and proteins …
epigenomics, proteomics, and metabolomics ultimately produces lists of genes and proteins …