Ion mobility mass spectrometry (IM-MS) for structural biology: insights gained by measuring mass, charge, and collision cross section

E Christofi, P Barran - Chemical Reviews, 2023 - ACS Publications
The investigation of macromolecular biomolecules with ion mobility mass spectrometry (IM-
MS) techniques has provided substantial insights into the field of structural biology over the …

Nuclear compartmentalization as a mechanism of quantitative control of gene expression

P Bhat, D Honson, M Guttman - Nature Reviews Molecular Cell Biology, 2021 - nature.com
Gene regulation requires the dynamic coordination of hundreds of regulatory factors at
precise genomic and RNA targets. Although many regulatory factors have specific affinity for …

Protein structure modeling with MODELLER

B Webb, A Sali - Functional genomics: Methods and protocols, 2017 - Springer
Genome sequencing projects have resulted in a rapid increase in the number of known
protein sequences. In contrast, only about one-hundredth of these sequences have been …

Visualizing the molecular sociology at the HeLa cell nuclear periphery

J Mahamid, S Pfeffer, M Schaffer, E Villa, R Danev… - Science, 2016 - science.org
The molecular organization of eukaryotic nuclear volumes remains largely unexplored. Here
we combined recent developments in cryo–electron tomography (cryo-ET) to produce three …

NMR spectroscopy captures the essential role of dynamics in regulating biomolecular function

TR Alderson, LE Kay - Cell, 2021 - cell.com
Biomolecules are in constant motion. To understand how they function, and why
malfunctions can cause disease, it is necessary to describe their three-dimensional …

PeSTo: parameter-free geometric deep learning for accurate prediction of protein binding interfaces

LF Krapp, LA Abriata, F Cortés Rodriguez… - Nature …, 2023 - nature.com
Proteins are essential molecular building blocks of life, responsible for most biological
functions as a result of their specific molecular interactions. However, predicting their …

[HTML][HTML] Interactome networks and human disease

M Vidal, ME Cusick, AL Barabási - Cell, 2011 - cell.com
Complex biological systems and cellular networks may underlie most genotype to
phenotype relationships. Here, we review basic concepts in network biology, discussing …

Cryo-EM: a unique tool for the visualization of macromolecular complexity

E Nogales, SHW Scheres - Molecular cell, 2015 - cell.com
3D cryo-electron microscopy (cryo-EM) is an expanding structural biology technique that has
recently undergone a quantum leap progression in its achievable resolution and its …

Quantifying the heterogeneity of macromolecular machines by mass photometry

A Sonn-Segev, K Belacic, T Bodrug, G Young… - Nature …, 2020 - nature.com
Sample purity is central to in vitro studies of protein function and regulation, and to the
efficiency and success of structural studies using techniques such as x-ray crystallography …

Natural supramolecular protein assemblies

BJGE Pieters, MB Van Eldijk, RJM Nolte… - Chemical Society …, 2016 - pubs.rsc.org
Supramolecular protein assemblies are an emerging area within the chemical sciences,
which combine the topological structures of the field of supramolecular chemistry and the …