Multilocus sequence typing (MLST) was proposed in 1998 as a portable sequence-based
method for identifying clonal relationships among bacteria. Today, in the whole-genome era …

The evolutionary history of a set of taxa is usually represented by a phylogenetic tree, and
this model has greatly facilitated the discussion and testing of hypotheses. However, it is …

There are outstanding evolutionary questions on the recent emergence of human
coronavirus SARS-CoV-2 including the role of reservoir species, the role of recombination …

The PubMLST. org website hosts a collection of open-access, curated databases that
integrate population sequence data with provenance and phenotype information for over …

Soft rot Enterobacteriaceae (SRE) are bacterial plant pathogens that cause blackleg, wilt
and soft rot diseases on a broad range of important crop and ornamental plants worldwide …

The tree of life is highly reticulate, with the history of population divergence emerging from
populations of gene phylogenies that reflect histories of introgression, lineage sorting and …

Dendroscope 3 is a new program for working with rooted phylogenetic trees and networks. It
provides a number of methods for drawing and comparing rooted phylogenetic networks …

Hybridisation and introgression can dramatically alter the relationships among groups of
species, leading to phylogenetic discordance across the genome and between populations …

Background The major clinical challenge in the treatment of high-grade serous ovarian
cancer (HGSOC) is the development of progressive resistance to platinum-based …

Crop diseases reduce wheat yields by~ 25% globally and thus pose a major threat to global
food security. Genetic resistance can reduce crop losses in the field and can be selected …