[图书][B] Bayesian evolutionary analysis with BEAST
AJ Drummond, RR Bouckaert - 2015 - books.google.com
What are the models used in phylogenetic analysis and what exactly is involved in Bayesian
evolutionary analysis using Markov chain Monte Carlo (MCMC) methods? How can you …
evolutionary analysis using Markov chain Monte Carlo (MCMC) methods? How can you …
Bayesian total-evidence dating reveals the recent crown radiation of penguins
The total-evidence approach to divergence time dating uses molecular and morphological
data from extant and fossil species to infer phylogenetic relationships, species divergence …
data from extant and fossil species to infer phylogenetic relationships, species divergence …
Bayesian inference of sampled ancestor trees for epidemiology and fossil calibration
Phylogenetic analyses which include fossils or molecular sequences that are sampled
through time require models that allow one sample to be a direct ancestor of another …
through time require models that allow one sample to be a direct ancestor of another …
Unifying phylogenetic birth–death models in epidemiology and macroevolution
Birth–death stochastic processes are the foundations of many phylogenetic models and are
widely used to make inferences about epidemiological and macroevolutionary dynamics …
widely used to make inferences about epidemiological and macroevolutionary dynamics …
Simultaneous reconstruction of evolutionary history and epidemiological dynamics from viral sequences with the birth–death SIR model
The evolution of RNA viruses, such as human immunodeficiency virus (HIV), hepatitis C
virus and influenza virus, occurs so rapidly that the viruses' genomes contain information on …
virus and influenza virus, occurs so rapidly that the viruses' genomes contain information on …
[HTML][HTML] The space of ultrametric phylogenetic trees
A Gavryushkin, AJ Drummond - Journal of theoretical biology, 2016 - Elsevier
The reliability of a phylogenetic inference method from genomic sequence data is ensured
by its statistical consistency. Bayesian inference methods produce a sample of phylogenetic …
by its statistical consistency. Bayesian inference methods produce a sample of phylogenetic …
Calibrated birth–death phylogenetic time-tree priors for Bayesian inference
J Heled, AJ Drummond - Systematic Biology, 2015 - academic.oup.com
Here we introduce a general class of multiple calibration birth–death tree priors for use in
Bayesian phylogenetic inference. All tree priors in this class separate ancestral node heights …
Bayesian phylogenetic inference. All tree priors in this class separate ancestral node heights …
Bayesian phylogenetic estimation of fossil ages
AJ Drummond, T Stadler - Philosophical Transactions of …, 2016 - royalsocietypublishing.org
Recent advances have allowed for both morphological fossil evidence and molecular
sequences to be integrated into a single combined inference of divergence dates under the …
sequences to be integrated into a single combined inference of divergence dates under the …
How to validate a Bayesian evolutionary model
Biology has become a highly mathematical discipline in which probabilistic models play a
central role. As a result, research in the biological sciences is now dependent on …
central role. As a result, research in the biological sciences is now dependent on …
A general birth-death-sampling model for epidemiology and macroevolution
Birth-death stochastic processes are the foundation of many phylogenetic models and are
widely used to make inferences about epidemiological and macroevolutionary dynamics …
widely used to make inferences about epidemiological and macroevolutionary dynamics …