Using machine learning approaches for multi-omics data analysis: A review
With the development of modern high-throughput omic measurement platforms, it has
become essential for biomedical studies to undertake an integrative (combined) approach to …
become essential for biomedical studies to undertake an integrative (combined) approach to …
Methods of integrating data to uncover genotype–phenotype interactions
MD Ritchie, ER Holzinger, R Li… - Nature Reviews …, 2015 - nature.com
Recent technological advances have expanded the breadth of available omic data, from
whole-genome sequencing data, to extensive transcriptomic, methylomic and metabolomic …
whole-genome sequencing data, to extensive transcriptomic, methylomic and metabolomic …
Machine learning: its challenges and opportunities in plant system biology
Sequencing technologies are evolving at a rapid pace, enabling the generation of massive
amounts of data in multiple dimensions (eg, genomics, epigenomics, transcriptomic …
amounts of data in multiple dimensions (eg, genomics, epigenomics, transcriptomic …
Machine learning and systems genomics approaches for multi-omics data
In light of recent advances in biomedical computing, big data science, and precision
medicine, there is a mammoth demand for establishing algorithms in machine learning and …
medicine, there is a mammoth demand for establishing algorithms in machine learning and …
A survey of algorithms for dense subgraph discovery
In this chapter, we present a survey of algorithms for dense subgraph discovery. The
problem of dense subgraph discovery is closely related to clustering though the two …
problem of dense subgraph discovery is closely related to clustering though the two …
Data-driven graph construction and graph learning: A review
A graph is one of important mathematical tools to describe ubiquitous relations. In the
classical graph theory and some applications, graphs are generally provided in advance, or …
classical graph theory and some applications, graphs are generally provided in advance, or …
Robust predictive model for evaluating breast cancer survivability
Objective Many machine learning models have aided medical specialists in diagnosis and
prognosis for breast cancer. Accuracy has been regarded as a primary measurement for the …
prognosis for breast cancer. Accuracy has been regarded as a primary measurement for the …
Multi-omics research strategies in ischemic stroke: A multidimensional perspective
W Li, C Shao, H Zhou, H Du, H Chen, H Wan… - Ageing Research …, 2022 - Elsevier
Ischemic stroke (IS) is a multifactorial and heterogeneous neurological disorder with high
rate of death and long-term impairment. Despite years of studies, there are still no stroke …
rate of death and long-term impairment. Despite years of studies, there are still no stroke …
Breast cancer survivability prediction using labeled, unlabeled, and pseudo-labeled patient data
J Kim, H Shin - Journal of the American Medical Informatics …, 2013 - academic.oup.com
Background Prognostic studies of breast cancer survivability have been aided by machine
learning algorithms, which can predict the survival of a particular patient based on historical …
learning algorithms, which can predict the survival of a particular patient based on historical …
Knowledge boosting: a graph-based integration approach with multi-omics data and genomic knowledge for cancer clinical outcome prediction
Objective Cancer can involve gene dysregulation via multiple mechanisms, so no single
level of genomic data fully elucidates tumor behavior due to the presence of numerous …
level of genomic data fully elucidates tumor behavior due to the presence of numerous …