Protein design: From the aspect of water solubility and stability

R Qing, S Hao, E Smorodina, D Jin, A Zalevsky… - Chemical …, 2022 - ACS Publications
Water solubility and structural stability are key merits for proteins defined by the primary
sequence and 3D-conformation. Their manipulation represents important aspects of the …

Structure and aggregation mechanisms in amyloids

ZL Almeida, RMM Brito - Molecules, 2020 - mdpi.com
The aggregation of a polypeptide chain into amyloid fibrils and their accumulation and
deposition into insoluble plaques and intracellular inclusions is the hallmark of several …

PASTA 2.0: an improved server for protein aggregation prediction

I Walsh, F Seno, SCE Tosatto… - Nucleic acids research, 2014 - academic.oup.com
The formation of amyloid aggregates upon protein misfolding is related to several
devastating degenerative diseases. The propensities of different protein sequences to …

[HTML][HTML] Computational methods to predict protein aggregation

S Navarro, S Ventura - Current Opinion in Structural Biology, 2022 - Elsevier
In most cases, protein aggregation stems from the establishment of non-native
intermolecular contacts. The formation of insoluble protein aggregates is associated with …

Computational methods and tools in antimicrobial peptide research

PGA Aronica, LM Reid, N Desai, J Li… - Journal of Chemical …, 2021 - ACS Publications
The evolution of antibiotic-resistant bacteria is an ongoing and troubling development that
has increased the number of diseases and infections that risk going untreated. There is an …

A consensus method for the prediction of 'aggregation-prone'peptides in globular proteins

AC Tsolis, NC Papandreou, VA Iconomidou… - PloS one, 2013 - journals.plos.org
The purpose of this work was to construct a consensus prediction algorithm of 'aggregation-
prone'peptides in globular proteins, combining existing tools. This allows comparison of the …

Physical basis of amyloid fibril polymorphism

W Close, M Neumann, A Schmidt, M Hora… - Nature …, 2018 - nature.com
Polymorphism is a key feature of amyloid fibril structures but it remains challenging to
explain these variations for a particular sample. Here, we report electron cryomicroscopy …

Pathologic polyglutamine aggregation begins with a self-poisoning polymer crystal

T Kandola, S Venkatesan, J Zhang, BT Lerbakken… - Elife, 2023 - elifesciences.org
A long-standing goal of amyloid research has been to characterize the structural basis of the
rate-determining nucleating event. However, the ephemeral nature of nucleation has made …

Accumulation of storage proteins in plant seeds is mediated by amyloid formation

KS Antonets, MV Belousov, AI Sulatskaya… - PLoS …, 2020 - journals.plos.org
Amyloids are protein aggregates with a highly ordered spatial structure giving them unique
physicochemical properties. Different amyloids not only participate in the development of …

MetAmyl: a METa-predictor for AMYLoid proteins

M Emily, A Talvas, C Delamarche - PloS one, 2013 - journals.plos.org
The aggregation of proteins or peptides in amyloid fibrils is associated with a number of
clinical disorders, including Alzheimer's, Huntington's and prion diseases, medullary thyroid …