From haematopoietic stem cells to complex differentiation landscapes

E Laurenti, B Göttgens - Nature, 2018 - nature.com
The development of mature blood cells from haematopoietic stem cells has long served as a
model for stem-cell research, with the haematopoietic differentiation tree being widely used …

Causes and consequences of hematopoietic stem cell heterogeneity

S Haas, A Trumpp, MD Milsom - Cell stem cell, 2018 - cell.com
Blood and immune cells derive from multipotent hematopoietic stem cells (HSCs).
Classically, stem and progenitor populations have been considered discrete homogeneous …

The single-cell epigenomic and transcriptional landscape of immunity to influenza vaccination

F Wimmers, M Donato, A Kuo, T Ashuach, S Gupta… - Cell, 2021 - cell.com
Emerging evidence indicates a fundamental role for the epigenome in immunity. Here, we
mapped the epigenomic and transcriptional landscape of immunity to influenza vaccination …

[HTML][HTML] Circulating tumor cell clustering shapes DNA methylation to enable metastasis seeding

S Gkountela, F Castro-Giner, BM Szczerba, M Vetter… - Cell, 2019 - cell.com
The ability of circulating tumor cells (CTCs) to form clusters has been linked to increased
metastatic potential. Yet biological features and vulnerabilities of CTC clusters remain …

Integrated single-cell analysis maps the continuous regulatory landscape of human hematopoietic differentiation

JD Buenrostro, MR Corces, CA Lareau, B Wu… - Cell, 2018 - cell.com
Human hematopoiesis involves cellular differentiation of multipotent cells into progressively
more lineage-restricted states. While the chromatin accessibility landscape of this process …

Single-cell multimodal glioma analyses identify epigenetic regulators of cellular plasticity and environmental stress response

KC Johnson, KJ Anderson, ET Courtois, AD Gujar… - Nature …, 2021 - nature.com
Glioma intratumoral heterogeneity enables adaptation to challenging microenvironments
and contributes to therapeutic resistance. We integrated 914 single-cell DNA methylomes …

Enhanced cell deconvolution of peripheral blood using DNA methylation for high-resolution immune profiling

LA Salas, Z Zhang, DC Koestler, RA Butler… - Nature …, 2022 - nature.com
DNA methylation microarrays can be employed to interrogate cell-type composition in
complex tissues. Here, we expand reference-based deconvolution of blood DNA …

[HTML][HTML] The International Human Epigenome Consortium: a blueprint for scientific collaboration and discovery

HG Stunnenberg, S Abrignani, D Adams, M de Almeida… - Cell, 2016 - cell.com
The International Human Epigenome Consortium (IHEC) coordinates the generation of a
catalog of high-resolution reference epigenomes of major primary human cell types. The …

DNA methylation loss in late-replicating domains is linked to mitotic cell division

W Zhou, HQ Dinh, Z Ramjan, DJ Weisenberger… - Nature …, 2018 - nature.com
DNA methylation loss occurs frequently in cancer genomes, primarily within lamina-
associated, late-replicating regions termed partially methylated domains (PMDs). We …

A pan-tissue DNA methylation atlas enables in silico decomposition of human tissue methylomes at cell-type resolution

T Zhu, J Liu, S Beck, S Pan, D Capper, M Lechner… - Nature …, 2022 - nature.com
Bulk-tissue DNA methylomes represent an average over many different cell types,
hampering our understanding of cell-type-specific contributions to disease development. As …