Investigating differential abundance methods in microbiome data: A benchmark study
M Cappellato, G Baruzzo… - PLoS computational …, 2022 - journals.plos.org
The development of increasingly efficient and cost-effective high throughput DNA
sequencing techniques has enhanced the possibility of studying complex microbial systems …
sequencing techniques has enhanced the possibility of studying complex microbial systems …
Duodenum Intestine-Chip for preclinical drug assessment in a human relevant model
Induction of intestinal drug metabolizing enzymes can complicate the development of new
drugs, owing to the potential to cause drug-drug interactions (DDIs) leading to changes in …
drugs, owing to the potential to cause drug-drug interactions (DDIs) leading to changes in …
[PDF][PDF] Rasusa: Randomly subsample sequencing reads to a specified coverage
MB Hall - Journal of open source software, 2022 - joss.theoj.org
A fundamental requirement for many applications in genomics is the sequencing of genetic
material (DNA/RNA). Different sequencing technologies exist, but all aim to accurately …
material (DNA/RNA). Different sequencing technologies exist, but all aim to accurately …
[HTML][HTML] Differential gene expression analysis pipelines and bioinformatic tools for the identification of specific biomarkers: A review
D Rosati, M Palmieri, G Brunelli, A Morrione… - Computational and …, 2024 - Elsevier
In recent years, the role of bioinformatics and computational biology together with omics
techniques and transcriptomics has gained tremendous importance in biomedicine and …
techniques and transcriptomics has gained tremendous importance in biomedicine and …
NOTCH signaling pathway is required for bovine early embryonic development
S Li, Y Shi, Y Dang, L Luo, B Hu, S Wang… - Biology of …, 2021 - academic.oup.com
The NOTCH signaling pathway plays an important role in regulating various biological
processes, including lineage specification and apoptosis. Multiple components of the …
processes, including lineage specification and apoptosis. Multiple components of the …
Library adaptors with integrated reference controls improve the accuracy and reliability of nanopore sequencing
Library adaptors are short oligonucleotides that are attached to RNA and DNA samples in
preparation for next-generation sequencing (NGS). Adaptors can also include additional …
preparation for next-generation sequencing (NGS). Adaptors can also include additional …
Proteomic profiling of IgA nephropathy reveals distinct molecular prognostic subtypes
IgA nephropathy (IgAN) is a heterogeneous disease, which poses a series of challenges to
accurate diagnosis and personalized therapy. Herein, we constructed a systematic …
accurate diagnosis and personalized therapy. Herein, we constructed a systematic …
Immune system modulation & virus transmission during parasitism identified by multi-species transcriptomics of a declining insect biocontrol system
Abstract Background The Argentine stem weevil (ASW, Listronotus bonariensis) is a
significant pasture pest in Aotearoa New Zealand, primarily controlled by the parasitoid …
significant pasture pest in Aotearoa New Zealand, primarily controlled by the parasitoid …
Comparative analysis of rRNA removal methods for RNA-Seq differential expression in halophilic archaea
MM Pastor, S Sakrikar, DN Rodriguez, AK Schmid - Biomolecules, 2022 - mdpi.com
Despite intense recent research interest in archaea, the scientific community has
experienced a bottleneck in the study of genome-scale gene expression experiments by …
experienced a bottleneck in the study of genome-scale gene expression experiments by …
Exploiting convergent phenotypes to derive a pan-cancer cisplatin response gene expression signature
Precision medicine offers remarkable potential for the treatment of cancer, but is largely
focused on tumors that harbor actionable mutations. Gene expression signatures can …
focused on tumors that harbor actionable mutations. Gene expression signatures can …