Challenges in analysis and interpretation of microsatellite data for population genetic studies

AI Putman, I Carbone - Ecology and evolution, 2014 - Wiley Online Library
Advancing technologies have facilitated the ever‐widening application of genetic markers
such as microsatellites into new systems and research questions in biology. In light of the …

Microsatellites: simple sequences with complex evolution

H Ellegren - Nature reviews genetics, 2004 - nature.com
Few genetic markers, if any, have found such widespread use as microsatellites, or
simple/short tandem repeats. Features such as hypervariability and ubiquitous occurrence …

The estimation of population differentiation with microsatellite markers

F Balloux, N Lugon‐Moulin - Molecular ecology, 2002 - Wiley Online Library
Microsatellite markers are routinely used to investigate the genetic structuring of natural
populations. The knowledge of how genetic variation is partitioned among populations may …

Homoplasy and mutation model at microsatellite loci and their consequences for population genetics analysis

A Estoup, P Jarne, JM Cornuet - Molecular ecology, 2002 - Wiley Online Library
Homoplasy has recently attracted the attention of population geneticists, as a consequence
of the popularity of highly variable stepwise mutating markers such as microsatellites …

Evolutionary dynamics of microsatellite DNA

C Schlötterer - Chromosoma, 2000 - Springer
Within the past decade microsatellites have developed into one of the most popular genetic
markers. Despite the widespread use of microsatellite analysis, an integral picture of the …

Perspective: highly variable loci and their interpretation in evolution and conservation

PW Hedrick - Evolution, 1999 - Wiley Online Library
Although highly variable loci, such as microsatellite loci, are revolutionizing both
evolutionary and conservation biology, data from these loci need to be carefully evaluated …

[PDF][PDF] Launching microsatellites: a review of mutation processes and methods of phylogenetic inference.

DB Goldstein, DD Pollock - Journal of heredity, 1997 - evolutionarygenomics.com
Microsatellites are short segments of DNA in which a specific motif of 1-6 bases is repeated
up to a usual maximum of 60 or so. Due to their exceptional variability and relative ease of …

Cross-species amplification of soybean (Glycine max) simple sequence repeats (SSRs) within the genus and other legume genera: implications for the transferability …

R Peakall, S Gilmore, W Keys… - Molecular biology …, 1998 - academic.oup.com
We investigated the transferability of 31 soybean (Glycine max) simple sequence repeat
(SSR) loci to wild congeners and to other legume genera. Up to 65% of the soybean primer …

Microsatellites: consensus and controversy

GK Chambers, ES MacAvoy - … and Physiology Part B: Biochemistry and …, 2000 - Elsevier
Microsatellite DNA loci have recently been adopted for many biological applications.
Comparative studies across a wide range of species has revealed many details of their …

Relative mutation rates at di-, tri-, and tetranucleotide microsatellite loci

R Chakraborty, M Kimmel, DN Stivers… - Proceedings of the …, 1997 - National Acad Sciences
Using the generalized stepwise mutation model, we propose a method of estimating the
relative mutation rates of microsatellite loci, grouped by the repeat motif. Applying ANOVA to …