Leveraging Single-Cell Populations to Uncover the Genetic Basis of Complex Traits

MAA Minow, AP Marand… - Annual review of genetics, 2023 - annualreviews.org
The ease and throughput of single-cell genomics have steadily improved, and its current
trajectory suggests that surveying single-cell populations will become routine. We discuss …

The development of plant genome sequencing technology and its conservation and application in endangered gymnosperms

K Hong, Y Radian, T Manda, H Xu, Y Luo - Plants, 2023 - mdpi.com
Genome sequencing is widely recognized as a fundamental pillar in genetic research and
legal studies of biological phenomena, providing essential insights for genetic investigations …

Uncovering key salt-tolerant regulators through a combined eQTL and GWAS analysis using the super pan-genome in rice

H Wei, X Wang, Z Zhang, L Yang, Q Zhang… - National Science …, 2024 - academic.oup.com
For sessile plants, gene expression plays a pivotal role in responding to salinity stress by
activating or suppressing specific genes. However, our knowledge of genetic variations …

MINI‐AC: inference of plant gene regulatory networks using bulk or single‐cell accessible chromatin profiles

N Manosalva Pérez, C Ferrari, J Engelhorn… - The Plant …, 2024 - Wiley Online Library
Gene regulatory networks (GRNs) represent the interactions between transcription factors
(TF) and their target genes. Plant GRNs control transcriptional programs involved in growth …

Leveraging Multiomics Insights and Exploiting Wild Relatives' Potential for Drought and Heat Tolerance in Maize

S Jamil, S Ahmad, R Shahzad, N Umer… - Journal of Agricultural …, 2024 - ACS Publications
Climate change, particularly drought and heat stress, may slash agricultural productivity by
25.7% by 2080, with maize being the hardest hit. Therefore, unraveling the molecular nature …

Allele-specific regulatory effects on the pig transcriptome

Y Lin, J Li, L Chen, J Bai, J Zhang, Y Wang, P Liu… - …, 2023 - academic.oup.com
Background Allele-specific expression (ASE) refers to the preferential expression of one
allele over the other and contributes to adaptive phenotypic plasticity. Here, we used a …

[HTML][HTML] Heat-tolerant maize for rainfed hot, dry environments in the lowland tropics: From breeding to improved seed delivery

PH Zaidi, MT Vinayan, SK Nair, PH Kuchanur, R Kumar… - The Crop Journal, 2023 - Elsevier
Climate change-induced heat stress combines two challenges: high day-and nighttime
temperatures, and physiological water deficit due to demand-side drought caused by …

Evolutionary dynamics of chromatin structure and duplicate gene expression in diploid and allopolyploid cotton

G Hu, CE Grover, DL Vera, PY Lung… - Molecular Biology …, 2024 - academic.oup.com
Polyploidy is a prominent mechanism of plant speciation and adaptation, yet the mechanistic
understandings of duplicated gene regulation remain elusive. Chromatin structure dynamics …

Genome‐wide expression quantitative trait locus analysis reveals silk‐preferential gene regulatory network in maize

X Wang, J Lu, M Han, Z Wang, H Zhang… - Physiologia …, 2024 - Wiley Online Library
Silk of maize (Zea mays L.) contains diverse metabolites with complicated structures and
functions, making it a great challenge to explore the mechanisms of metabolic regulation …

Tensor decomposition reveals trans-regulated gene modules in maize drought response

J Lu, Y Xie, C Li, J Yang, J Fu - Journal of Genetics and Genomics, 2024 - Elsevier
When plants respond to drought stress, dynamic cellular changes occur, accompanied by
alterations in gene expression, which often act through trans-regulation. However, the …