Microbial surface colonization and biofilm development in marine environments
H Dang, CR Lovell - Microbiology and molecular biology reviews, 2016 - Am Soc Microbiol
Biotic and abiotic surfaces in marine waters are rapidly colonized by microorganisms.
Surface colonization and subsequent biofilm formation and development provide numerous …
Surface colonization and subsequent biofilm formation and development provide numerous …
Insights from 20 years of bacterial genome sequencing
Since the first two complete bacterial genome sequences were published in 1995, the
science of bacteria has dramatically changed. Using third-generation DNA sequencing, it is …
science of bacteria has dramatically changed. Using third-generation DNA sequencing, it is …
Generation of genome-scale metabolic reconstructions for 773 members of the human gut microbiota
Genome-scale metabolic models derived from human gut metagenomic data can be used
as a framework to elucidate how microbial communities modulate human metabolism and …
as a framework to elucidate how microbial communities modulate human metabolism and …
A systematic assessment of current genome-scale metabolic reconstruction tools
Background Several genome-scale metabolic reconstruction software platforms have been
developed and are being continuously updated. These tools have been widely applied to …
developed and are being continuously updated. These tools have been widely applied to …
New applications of synthetic biology tools for cyanobacterial metabolic engineering
Cyanobacteria are promising microorganisms for sustainable biotechnologies, yet unlocking
their potential requires radical re-engineering and application of cutting-edge synthetic …
their potential requires radical re-engineering and application of cutting-edge synthetic …
Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology
Pathway Tools is a bioinformatics software environment with a broad set of capabilities. The
software provides genome-informatics tools such as a genome browser, sequence …
software provides genome-informatics tools such as a genome browser, sequence …
Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology
Pathway Tools is a production-quality software environment for creating a type of model-
organism database called a Pathway/Genome Database (PGDB). A PGDB such as EcoCyc …
organism database called a Pathway/Genome Database (PGDB). A PGDB such as EcoCyc …
[HTML][HTML] The secondary metabolite bioinformatics portal: computational tools to facilitate synthetic biology of secondary metabolite production
Natural products are among the most important sources of lead molecules for drug
discovery. With the development of affordable whole-genome sequencing technologies and …
discovery. With the development of affordable whole-genome sequencing technologies and …
[HTML][HTML] Advances in constraint-based modelling of microbial communities
Microbial communities are near universally present in nature. A wealth of meta-omics data
has been gathered from numerous ecosystems, such as the human gut, ocean or soil …
has been gathered from numerous ecosystems, such as the human gut, ocean or soil …
Current state and applications of microbial genome-scale metabolic models
Genome-scale metabolic models (GEMs) are valuable in describing an organism's entire
metabolism using genomic information and have made huge impact on systems biology and …
metabolism using genomic information and have made huge impact on systems biology and …