Graph representation learning in biomedicine and healthcare
Networks—or graphs—are universal descriptors of systems of interacting elements. In
biomedicine and healthcare, they can represent, for example, molecular interactions …
biomedicine and healthcare, they can represent, for example, molecular interactions …
[HTML][HTML] Graph neural networks and their current applications in bioinformatics
XM Zhang, L Liang, L Liu, MJ Tang - Frontiers in genetics, 2021 - frontiersin.org
Graph neural networks (GNNs), as a branch of deep learning in non-Euclidean space,
perform particularly well in various tasks that process graph structure data. With the rapid …
perform particularly well in various tasks that process graph structure data. With the rapid …
Vision Transformers in medical computer vision—A contemplative retrospection
Abstract Vision Transformers (ViTs), with the magnificent potential to unravel the information
contained within images, have evolved as one of the most contemporary and dominant …
contained within images, have evolved as one of the most contemporary and dominant …
Graph deep learning for the characterization of tumour microenvironments from spatial protein profiles in tissue specimens
Multiplexed immunofluorescence imaging allows the multidimensional molecular profiling of
cellular environments at subcellular resolution. However, identifying and characterizing …
cellular environments at subcellular resolution. However, identifying and characterizing …
A graph-transformer for whole slide image classification
Deep learning is a powerful tool for whole slide image (WSI) analysis. Typically, when
performing supervised deep learning, a WSI is divided into small patches, trained and the …
performing supervised deep learning, a WSI is divided into small patches, trained and the …
Pathomic fusion: an integrated framework for fusing histopathology and genomic features for cancer diagnosis and prognosis
Cancer diagnosis, prognosis, mymargin and therapeutic response predictions are based on
morphological information from histology slides and molecular profiles from genomic data …
morphological information from histology slides and molecular profiles from genomic data …
Artificial intelligence for digital and computational pathology
Advances in digitizing tissue slides and the fast-paced progress in artificial intelligence,
including deep learning, have boosted the field of computational pathology. This field holds …
including deep learning, have boosted the field of computational pathology. This field holds …
Derivation of prognostic contextual histopathological features from whole-slide images of tumours via graph deep learning
Methods of computational pathology applied to the analysis of whole-slide images (WSIs) do
not typically consider histopathological features from the tumour microenvironment. Here …
not typically consider histopathological features from the tumour microenvironment. Here …
Principles and challenges of modeling temporal and spatial omics data
Studies with temporal or spatial resolution are crucial to understand the molecular dynamics
and spatial dependencies underlying a biological process or system. With advances in high …
and spatial dependencies underlying a biological process or system. With advances in high …
[HTML][HTML] Machine learning methods for cancer classification using gene expression data: A review
F Alharbi, A Vakanski - Bioengineering, 2023 - mdpi.com
Cancer is a term that denotes a group of diseases caused by the abnormal growth of cells
that can spread in different parts of the body. According to the World Health Organization …
that can spread in different parts of the body. According to the World Health Organization …