[HTML][HTML] Machine learning for plant stress modeling: A perspective towards hormesis management
Plant stress is one of the most significant factors affecting plant fitness and, consequently,
food production. However, plant stress may also be profitable since it behaves hormetically; …
food production. However, plant stress may also be profitable since it behaves hormetically; …
[HTML][HTML] Advances in genomics and genome editing for breeding next generation of fruit and nut crops
S Savadi, S Mangalassery, MS Sandesh - Genomics, 2021 - Elsevier
Fruit tree crops are an essential part of the food production systems and are key to achieve
food and nutrition security. Genetic improvement of fruit trees by conventional breeding has …
food and nutrition security. Genetic improvement of fruit trees by conventional breeding has …
[HTML][HTML] A pangenome analysis pipeline provides insights into functional gene identification in rice
Background A pangenome aims to capture the complete genetic diversity within a species
and reduce bias in genetic analysis inherent in using a single reference genome. However …
and reduce bias in genetic analysis inherent in using a single reference genome. However …
[HTML][HTML] Comparative gene retention analysis in barley, wild emmer, and bread wheat pangenome lines reveals factors affecting gene retention following gene …
Background Gene duplication is a prevalent phenomenon and a major driving force
underlying genome evolution. The process leading to the fixation of gene duplicates …
underlying genome evolution. The process leading to the fixation of gene duplicates …
Genome architecture and diverged selection shaping pattern of genomic differentiation in wild barley
Divergent selection of populations in contrasting environments leads to functional genomic
divergence. However, the genomic architecture underlying heterogeneous genomic …
divergence. However, the genomic architecture underlying heterogeneous genomic …
[HTML][HTML] Expanding gene-editing potential in crop improvement with pangenomes
Pangenomes aim to represent the complete repertoire of the genome diversity present
within a species or cohort of species, capturing the genomic structural variance between …
within a species or cohort of species, capturing the genomic structural variance between …
Pan-genome for pearl millet that beats the heat
A better understanding of crop genomes reveals that structural variations (SVs) are crucial
for genetic improvement. A graph-based pan-genome by Yan et al. uncovered 424 085 …
for genetic improvement. A graph-based pan-genome by Yan et al. uncovered 424 085 …
Comparative pangenome analyses provide insights into the evolution of Brassica rapa resistance gene analogues (RGAs)
Brassica rapa is grown worldwide as economically important vegetable and oilseed crop.
However, its production is challenged by yield‐limiting pathogens. The sustainable control …
However, its production is challenged by yield‐limiting pathogens. The sustainable control …
[HTML][HTML] CRISPR/Cas as a Genome-Editing Technique in Fruit Tree Breeding
M Martín-Valmaseda, SR Devin… - International Journal of …, 2023 - mdpi.com
CRISPR (short for “Clustered Regularly Interspaced Short Palindromic Repeats”) is a
technology that research scientists use to selectively modify the DNA of living organisms …
technology that research scientists use to selectively modify the DNA of living organisms …
[HTML][HTML] Impact of whole-genome duplications on structural variant evolution in Cochlearia
T Hämälä, C Moore, L Cowan, M Carlile… - Nature …, 2024 - nature.com
Polyploidy, the result of whole-genome duplication (WGD), is a major driver of eukaryote
evolution. Yet WGDs are hugely disruptive mutations, and we still lack a clear understanding …
evolution. Yet WGDs are hugely disruptive mutations, and we still lack a clear understanding …