[HTML][HTML] The application of metagenomics to study microbial communities and develop desirable traits in fermented foods

M Srinivas, O O'Sullivan, PD Cotter, D Sinderen… - Foods, 2022 - mdpi.com
The microbial communities present within fermented foods are diverse and dynamic,
producing a variety of metabolites responsible for the fermentation processes, imparting …

[HTML][HTML] High-throughput sequencing in plant disease management: a comprehensive review of benefits, challenges, and future perspectives

MM Nizamani, Q Zhang, G Muhae-Ud-Din… - Phytopathology …, 2023 - Springer
High-throughput sequencing (HTS) has instigated a paradigm shift in plant pathology,
showcasing its transformative role in the management of plant diseases. As a powerful tool …

Cas12a/Guide RNA-based platforms for rapidly and accurately identifying Staphylococcus aureus and methicillin-resistant S. aureus

X Cao, Y Chang, C Tao, S Chen, Q Lin… - Microbiology …, 2023 - Am Soc Microbiol
In order to ensure the prevention and control of methicillin-resistant Staphylococcus aureus
(MRSA) infection, rapid and accurate detection of pathogens and their resistance …

Metagenomic analysis revealed highly diverse carbon fixation microorganisms in a petroleum-hydrocarbon-contaminated aquifer

Z Ning, P Cai, M Zhang - Environmental Research, 2024 - Elsevier
As one of the ultimate products of hydrocarbon biodegradation, inorganic carbon always be
used to evaluate hydrocarbon biodegradation rates in petroleum-hydrocarbon-contaminated …

[HTML][HTML] The TiHoCL panel for canine lymphoma: a feasibility study integrating functional genomics and network biology approaches for comparative oncology …

S Fibi-Smetana, C Inglis, D Schuster… - Frontiers in veterinary …, 2023 - frontiersin.org
Targeted next-generation sequencing (NGS) enables the identification of genomic variants
in cancer patients with high sensitivity at relatively low costs, and has thus opened the era to …

[HTML][HTML] Deep sequencing of porcine reproductive and respiratory syndrome virus ORF7: a promising tool for diagnostics and epidemiologic surveillance

S Jakab, K Bali, C Freytag, A Pataki, E Fehér, M Halas… - Animals, 2023 - mdpi.com
Simple Summary Porcine reproductive and respiratory syndrome is a viral disease that
causes significant economic losses in many countries worldwide. In this study, we employed …

[HTML][HTML] The innovative informatics approaches of high-throughput technologies in livestock: spearheading the sustainability and resiliency of agrigenomics research

GGD Suminda, M Ghosh, YO Son - Life, 2022 - mdpi.com
For more than a decade, next-generation sequencing (NGS) has been emerging as the
mainstay of agrigenomics research. High-throughput technologies have made it feasible to …

[HTML][HTML] Whole-genome variants dataset of 209 local chickens from China

X Tan, J Zhang, J Dong, M Huang, Q Li, H Wang, L Bai… - Scientific Data, 2024 - nature.com
Compared to commercial chickens, local breeds exhibit better in meat quality and flavour,
but the productivity (eg, growth rate, body weight) of local chicken breeds is rather low …

Augmented surveillance of antimicrobial resistance with high-throughput robotics detects transnational flow of fluoroquinolone-resistant Escherichia coli strain into …

A Truswell, ZZ Lee, M Stegger, J Blinco… - Journal of …, 2023 - academic.oup.com
Background Food animal AMR surveillance programs assess only small numbers of
Escherichia coli (from 100 to 600 per animal class) nationally each year, severely limiting …

Global prevalence and risk factors associated with Toxoplasma gondii infection in wild birds: A systematic review and meta-analysis

C Chen, SY Qin, X Yang, XM Li, Y Cai, CC Lei… - Preventive Veterinary …, 2024 - Elsevier
A systematic review and meta-analysis were performed to identify the global prevalence and
factors associated with Toxoplasma gondii infection in wild birds. Six bibliographic …