Chemical and biophysical signatures of the protein corona in nanomedicine

J Ren, N Andrikopoulos, K Velonia… - Journal of the …, 2022 - ACS Publications
An inconvenient hurdle in the practice of nanomedicine is the protein corona, a spontaneous
collection of biomolecular species by nanoparticles in living systems. The protein corona is …

An overview of molecular modeling for drug discovery with specific illustrative examples of applications

M Aminpour, C Montemagno, JA Tuszynski - Molecules, 2019 - mdpi.com
In this paper we review the current status of high-performance computing applications in the
general area of drug discovery. We provide an introduction to the methodologies applied at …

Systematic comparison of the structural and dynamic properties of commonly used water models for molecular dynamics simulations

SP Kadaoluwa Pathirannahalage… - Journal of Chemical …, 2021 - ACS Publications
Water is a unique solvent that is ubiquitous in biology and present in a variety of solutions,
mixtures, and materials settings. It therefore forms the basis for all molecular dynamics …

Rapidly determining the 3D structure of proteins by surface-enhanced Raman spectroscopy

H Ma, S Yan, X Lu, YF Bao, J Liu, L Liao, K Dai… - Science …, 2023 - science.org
Despite great advances in protein structure analysis, label-free and ultrasensitive methods
to obtain the natural and dynamic three-dimensional (3D) structures are still urgently …

The interaction of amines with gold nanoparticles

Y Lyu, LM Becerril, M Vanzan, S Corni… - Advanced …, 2024 - Wiley Online Library
Understanding the interactions between amines and the surface of gold nanoparticles is
important because of their role in the stabilization of the nanosystems, in the formation of the …

Biointerface structural effects on the properties and applications of bioinspired peptide-based nanomaterials

TR Walsh, MR Knecht - Chemical reviews, 2017 - ACS Publications
Peptide sequences are known to recognize and bind different nanomaterial surfaces, which
has resulted in the screening and identification of hundreds of peptides with the ability to …

Modeling and simulation of protein–surface interactions: achievements and challenges

M Ozboyaci, DB Kokh, S Corni… - Quarterly reviews of …, 2016 - cambridge.org
Understanding protein–inorganic surface interactions is central to the rational design of new
tools in biomaterial sciences, nanobiotechnology and nanomedicine. Although a significant …

Impact of nanoparticles on amyloid peptide and protein aggregation: a review with a focus on gold nanoparticles

T John, A Gladytz, C Kubeil, LL Martin, HJ Risselada… - Nanoscale, 2018 - pubs.rsc.org
Society is increasingly exposed to nanoparticles as they are ubiquitous in nature and
introduced as man-made air pollutants and as functional ingredients in cosmetic products as …

Insight into induced charges at metal surfaces and biointerfaces using a polarizable Lennard–Jones potential

IL Geada, H Ramezani-Dakhel, T Jamil… - Nature …, 2018 - nature.com
Metallic nanostructures have become popular for applications in therapeutics, catalysts,
imaging, and gene delivery. Molecular dynamics simulations are gaining influence to predict …

Simulations of inorganic–bioorganic interfaces to discover new materials: insights, comparisons to experiment, challenges, and opportunities

H Heinz, H Ramezani-Dakhel - Chemical Society Reviews, 2016 - pubs.rsc.org
Natural and man-made materials often rely on functional interfaces between inorganic and
organic compounds. Examples include skeletal tissues and biominerals, drug delivery …