[HTML][HTML] A review of computational tools for generating metagenome-assembled genomes from metagenomic sequencing data
Metagenomic sequencing provides a culture-independent avenue to investigate the
complex microbial communities by constructing metagenome-assembled genomes (MAGs) …
complex microbial communities by constructing metagenome-assembled genomes (MAGs) …
Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0
Microbial genomes are available at an ever-increasing pace, as cultivation and sequencing
become cheaper and obtaining metagenome-assembled genomes (MAGs) becomes more …
become cheaper and obtaining metagenome-assembled genomes (MAGs) becomes more …
[HTML][HTML] Correlation between the gut microbiome and neurodegenerative diseases: a review of metagenomics evidence
X Liu, Y Liu, J Liu, H Zhang, C Shan… - Neural Regeneration …, 2024 - journals.lww.com
A growing body of evidence suggests that the gut microbiota contributes to the development
of neurodegenerative diseases via the microbiota-gut-brain axis. As a contributing factor …
of neurodegenerative diseases via the microbiota-gut-brain axis. As a contributing factor …
Protective role of the Arabidopsis leaf microbiota against a bacterial pathogen
CM Vogel, DB Potthoff, M Schäfer, N Barandun… - Nature …, 2021 - nature.com
The aerial parts of plants are host to taxonomically structured bacterial communities.
Members of the core phyllosphere microbiota can protect Arabidopsis thaliana against foliar …
Members of the core phyllosphere microbiota can protect Arabidopsis thaliana against foliar …
Circulating levels of the short-chain fatty acid acetate mediate the effect of the gut microbiome on visceral fat
Background Acetate is a short-chain fatty acid (SCFA) produced by gut bacteria, which has
been implicated in cardio-metabolic health. Here we examine the relationships of circulating …
been implicated in cardio-metabolic health. Here we examine the relationships of circulating …
The gut microbiota-induced kynurenic acid recruits GPR35-positive macrophages to promote experimental encephalitis
The intricate interplay between gut microbes and the onset of experimental autoimmune
encephalomyelitis (EAE) remains poorly understood. Here, we uncover remarkable …
encephalomyelitis (EAE) remains poorly understood. Here, we uncover remarkable …
A pan-genome-based machine learning approach for predicting antimicrobial resistance activities of the Escherichia coli strains
Motivation Antimicrobial resistance (AMR) is becoming a huge problem in both developed
and developing countries, and identifying strains resistant or susceptible to certain …
and developing countries, and identifying strains resistant or susceptible to certain …
Glutamate enhances osmoadaptation of anammox bacteria under high salinity: genomic analysis and experimental evidence
An osmoprotectant that alleviates the bacterial osmotic stress can improve the bioreactor
treatment of saline wastewater. However, proposed candidates are expensive, and …
treatment of saline wastewater. However, proposed candidates are expensive, and …
Pseudomonas allii sp. nov., a pathogen causing soft rot of onion in Japan
H Sawada, T Fujikawa, M Tsuji… - International Journal of …, 2021 - microbiologyresearch.org
Six phytopathogenic bacterial strains, MAFF 301512, MAFF 301513, MAFF 301514T, MAFF
301515, MAFF 301516 and MAFF 301517, were isolated from soft rot lesions of onion …
301515, MAFF 301516 and MAFF 301517, were isolated from soft rot lesions of onion …
[HTML][HTML] Invasive non-typhoidal Salmonella (iNTS) aminoglycoside-resistant ST313 isolates feature unique pathogenic mechanisms to reach the bloodstream
Invasive non-typhoidal Salmonella (iNTS) from the clonal type ST313 (S. Typhimurium
ST313) is the primary cause of invasive salmonellosis in Africa. Recently, in Brazil, iNTS …
ST313) is the primary cause of invasive salmonellosis in Africa. Recently, in Brazil, iNTS …