A novel molecular representation with BiGRU neural networks for learning atom

X Lin, Z Quan, ZJ Wang, H Huang… - Briefings in …, 2020 - academic.oup.com
Molecular representations play critical roles in researching drug design and properties, and
effective methods are beneficial to assisting in the calculation of molecules and solving …

N-terminomics–its past and recent advancements

P Kaushal, C Lee - Journal of Proteomics, 2021 - Elsevier
N-terminomics is a rapidly evolving branch of proteomics that encompasses the study of
protein N-terminal sequence. A proteome-wide collection of such sequences has been …

The role of N-acetyltransferases in cancers

R Zhu, M Chen, Y Luo, H Cheng, Z Zhao, M Zhang - Gene, 2024 - Elsevier
Cancer is a major global health problem that disrupts the balance of normal cellular growth
and behavior. Mounting evidence has shown that epigenetic modification, specifically N …

A system for learning atoms based on long short-term memory recurrent neural networks

Z Quan, X Lin, ZJ Wang, Y Liu… - 2018 IEEE International …, 2018 - ieeexplore.ieee.org
In recent years, researchers in the fields of bioinformatics and cheminformatics have
attempted to utilize machine learning methods for molecule modeling, bioactivity prediction …

VirulentPred 2.0: an improved method for prediction of virulent proteins in bacterial pathogens

A Sharma, A Garg, J Ramana, D Gupta - Protein Science, 2023 - Wiley Online Library
Virulence proteins in pathogens are essential for causing disease in a host. They enable the
pathogen to invade, survive and multiply within the host, thus enhancing its potential to …

Prediction of extracellular matrix proteins by fusing multiple feature information, elastic net, and random forest algorithm

M Wang, L Yue, X Cui, C Chen, H Zhou, Q Ma, B Yu - Mathematics, 2020 - mdpi.com
Extracellular matrix (ECM) proteins play an important role in a series of biological processes
of cells. The study of ECM proteins is helpful to further comprehend their biological functions …

Prediction of protein N-terminal acetylation modification sites based on CNN-BiLSTM-attention model

J Ke, J Zhao, H Li, L Yuan, G Dong, G Wang - Computers in Biology and …, 2024 - Elsevier
N-terminal acetylation is one of the most common and important post-translational
modifications (PTM) of eukaryotic proteins. PTM plays a crucial role in various cellular …

A note on the interpretation of tree‐based regression models

A Gottard, G Vannucci, GM Marchetti - Biometrical Journal, 2020 - Wiley Online Library
Tree‐based models are a popular tool for predicting a response given a set of explanatory
variables when the regression function is characterized by a certain degree of complexity …

N-terminal acetyltransferase NatB regulates Rad51-dependent repair of double-strand breaks in Saccharomyces cerevisiae

N Sugaya, S Tanaka, K Keyamura, S Noda… - Genes & Genetic …, 2023 - jstage.jst.go.jp
Homologous recombination (HR) is a highly accurate mechanism for repairing DNA double-
strand breaks (DSBs) that arise from various genotoxic insults and blocked replication forks …

NAA60 (HAT4): the newly discovered bi-functional Golgi member of the acetyltransferase family

F Donnarumma, V Tucci, C Ambrosino, L Altucci… - Clinical …, 2022 - Springer
Chromatin structural organization, gene expression and proteostasis are intricately
regulated in a wide range of biological processes, both physiological and pathological …