Advances in the characterization of RNA‐binding proteins
D Marchese, NS de Groot… - Wiley …, 2016 - Wiley Online Library
From transcription, to transport, storage, and translation, RNA depends on association with
different RNA‐binding proteins (RBPs). Methods based on next‐generation sequencing and …
different RNA‐binding proteins (RBPs). Methods based on next‐generation sequencing and …
catRAPID omics: a web server for large-scale prediction of protein–RNA interactions
Here we introduce cat RAPID omics, a server for large-scale calculations of protein–RNA
interactions. Our web server allows (i) predictions at proteomic and transcriptomic level;(ii) …
interactions. Our web server allows (i) predictions at proteomic and transcriptomic level;(ii) …
Orthogonal matrix factorization enables integrative analysis of multiple RNA binding proteins
Motivation: RNA binding proteins (RBPs) play important roles in post-transcriptional control
of gene expression, including splicing, transport, polyadenylation and RNA stability. To …
of gene expression, including splicing, transport, polyadenylation and RNA stability. To …
Non-coding RNAs in lung cancer: contribution of bioinformatics analysis to the development of non-invasive diagnostic tools
Lung cancer is currently the leading cause of cancer related mortality due to late diagnosis
and limited treatment intervention. Non-coding RNAs are not translated into proteins and …
and limited treatment intervention. Non-coding RNAs are not translated into proteins and …
Protein complex scaffolding predicted as a prevalent function of long non-coding RNAs
The human transcriptome contains thousands of long non-coding RNAs (lncRNAs).
Characterizing their function is a current challenge. An emerging concept is that lncRNAs …
Characterizing their function is a current challenge. An emerging concept is that lncRNAs …
A large-scale assessment of nucleic acids binding site prediction programs
Computational prediction of nucleic acid binding sites in proteins are necessary to
disentangle functional mechanisms in most biological processes and to explore the binding …
disentangle functional mechanisms in most biological processes and to explore the binding …
Prediction of protein-RNA interactions from single-cell transcriptomic data
Proteins are crucial in regulating every aspect of RNA life, yet understanding their
interactions with coding and noncoding RNAs remains limited. Experimental studies are …
interactions with coding and noncoding RNAs remains limited. Experimental studies are …
Long intergenic non-coding RNAs (LincRNAs) identified by RNA-seq in breast cancer
In an attempt to find the correlation of aberrant expression of long intergenic noncoding
RNAs (lincRNAs) with cancer, twenty-five samples of breast cancer tissue and respective …
RNAs (lincRNAs) with cancer, twenty-five samples of breast cancer tissue and respective …
Principles of self-organization in biological pathways: a hypothesis on the autogenous association of alpha-synuclein
A Zanzoni, D Marchese, F Agostini… - Nucleic acids …, 2013 - academic.oup.com
Previous evidence indicates that a number of proteins are able to interact with cognate
mRNAs. These autogenous associations represent important regulatory mechanisms that …
mRNAs. These autogenous associations represent important regulatory mechanisms that …
Constitutive patterns of gene expression regulated by RNA-binding proteins
Background RNA-binding proteins regulate a number of cellular processes, including
synthesis, folding, translocation, assembly and clearance of RNAs. Recent studies have …
synthesis, folding, translocation, assembly and clearance of RNAs. Recent studies have …