Recombinant expression of nanobodies and nanobody-derived immunoreagents

A De Marco - Protein expression and purification, 2020 - Elsevier
Antibody fragments for which the sequence is available are suitable for straightforward
engineering and expression in both eukaryotic and prokaryotic systems. When produced as …

[HTML][HTML] Engineering stability, viscosity, and immunogenicity of antibodies by computational design

D Kuroda, K Tsumoto - Journal of Pharmaceutical Sciences, 2020 - Elsevier
In recent years, computational methods have garnered much attention in protein
engineering. A large number of computational methods have been developed to analyze the …

Aggrescan3D (A3D) 2.0: prediction and engineering of protein solubility

A Kuriata, V Iglesias, J Pujols, M Kurcinski… - Nucleic acids …, 2019 - academic.oup.com
Protein aggregation is a hallmark of a growing number of human disorders and constitutes a
major bottleneck in the manufacturing of therapeutic proteins. Therefore, there is a strong …

Electrochemical immunosensor functionalized with nanobodies for the detection of the toxic microalgae Alexandrium minutum using glassy carbon electrode modified …

S Oloketuyi, E Mazzega, J Zavašnik… - Biosensors and …, 2020 - Elsevier
In this work an electrochemical immunosensor for the toxic microalgae Alexandrium
minutum (A. minutum AL9T) detection is described. A glassy carbon electrode (GCE) was …

A consensus protocol for the in silico optimisation of antibody fragments

MA Soler, B Medagli, MS Semrau, P Storici… - Chemical …, 2019 - pubs.rsc.org
We present an in silico mutagenetic protocol for improving the binding affinity of single
domain antibodies (or nanobodies, VHHs). The method iteratively attempts random …

Homology modeling-based in silico affinity maturation improves the affinity of a nanobody

X Cheng, J Wang, G Kang, M Hu, B Yuan… - International Journal of …, 2019 - mdpi.com
Affinity maturation and rational design have a raised importance in the application of
nanobody (VHH), and its unique structure guaranteed these processes quickly done in vitro …

Delicate balance among thermal stability, binding affinity, and conformational space explored by single-domain VHH antibodies

E Ikeuchi, D Kuroda, M Nakakido, A Murakami… - Scientific Reports, 2021 - nature.com
The high binding affinities and specificities of antibodies have led to their use as drugs and
biosensors. Single-domain VHH antibodies exhibit high specificity and affinity but have …

Binding affinity prediction of nanobody–protein complexes by scoring of molecular dynamics trajectories

MA Soler, S Fortuna, A De Marco, A Laio - … Chemistry Chemical Physics, 2018 - pubs.rsc.org
Nanobodies offer a viable alternative to antibodies for engineering high affinity binders.
Their small size has an additional advantage: it allows exploiting computational protocols for …

Effect of humanizing mutations on the stability of the llama single-domain variable region

MA Soler, B Medagli, J Wang, S Oloketuyi, G Bajc… - Biomolecules, 2021 - mdpi.com
In vivo clinical applications of nanobodies (VHHs) require molecules that induce minimal
immunoresponse and therefore possess sequences as similar as possible to the human VH …

Protein purification strategies must consider downstream applications and individual biological characteristics

K Remans, M Lebendiker, C Abreu, M Maffei… - Microbial Cell …, 2022 - Springer
Background Proteins are used as reagents in a broad range of scientific fields. The reliability
and reproducibility of experimental data will largely depend on the quality of the …