A survey of the year 2006 literature on applications of isothermal titration calorimetry
O Okhrimenko, I Jelesarov - Journal of Molecular Recognition …, 2008 - Wiley Online Library
Isothermal titration calorimetry (ITC) is a fast and robust method to determine the energetics
of association reactions in solution. The changes in enthalpy, entropy and heat capacity that …
of association reactions in solution. The changes in enthalpy, entropy and heat capacity that …
Disordered interactome of human papillomavirus
Intrinsically disordered proteins (IDPs) and proteins with long intrinsically disordered protein
regions (IDPRs) lack ordered structure but are involved in a multitude of biological …
regions (IDPRs) lack ordered structure but are involved in a multitude of biological …
Triple lysine and nucleosome-binding motifs of the viral IE19 protein are required for human cytomegalovirus S-phase infections
MR Maliano, KD Yetming, RF Kalejta - Mbio, 2024 - Am Soc Microbiol
Herpesvirus genomes are maintained as extrachromosomal plasmids within the nuclei of
infected cells. Some herpesviruses persist within dividing cells, putting the viral genome at …
infected cells. Some herpesviruses persist within dividing cells, putting the viral genome at …
The Basic Helix− Loop− Helix Region of Human Neurogenin 1 Is a Monomeric Natively Unfolded Protein Which Forms a “Fuzzy” Complex upon DNA Binding
D Aguado-Llera, E Goormaghtigh, N De Geest… - Biochemistry, 2010 - ACS Publications
Neuronal specification is regulated by the activity of transcription factors containing the basic
helix− loop− helix motif (bHLH); these regulating proteins include, among others, the …
helix− loop− helix motif (bHLH); these regulating proteins include, among others, the …
Comprehensive comparison of the interaction of the E2 master regulator with its cognate target DNA sites in 73 human papillomavirus types by sequence statistics
IE Sanchez, M Dellarole, K Gaston… - Nucleic acids …, 2008 - academic.oup.com
Mucosal human papillomaviruses (HPVs) are etiological agents of oral, anal and genital
cancer. Properties of high-and low-risk HPV types cannot be reduced to discrete molecular …
cancer. Properties of high-and low-risk HPV types cannot be reduced to discrete molecular …
Transition state for protein–DNA recognition
DU Ferreiro, IE Sánchez… - Proceedings of the …, 2008 - National Acad Sciences
We describe the formation of protein–DNA contacts in the two-state route for DNA sequence
recognition by a transcriptional regulator. Surprisingly, direct sequence readout establishes …
recognition by a transcriptional regulator. Surprisingly, direct sequence readout establishes …
Dimerization of the human papillomavirus type 16 E2 N terminus results in DNA looping within the upstream regulatory region
EE Hernandez-Ramon, JE Burns, W Zhang… - Journal of …, 2008 - Am Soc Microbiol
Papillomavirus E2 proteins play a central role in regulating viral gene expression and
replication. DNA-binding activity is associated with the C-terminal domain of E2, which forms …
replication. DNA-binding activity is associated with the C-terminal domain of E2, which forms …
A quasi‐spontaneous amyloid route in a DNA binding gene regulatory domain: the papillomavirus HPV16 E2 protein
The DNA binding domain of papillomavirus E2 proteins is at the center of the regulation of
gene transcription and replication of the virus. Its unique fold consists of a β‐barrel domain …
gene transcription and replication of the virus. Its unique fold consists of a β‐barrel domain …
The recognition of local DNA conformation by the human papillomavirus type 6 E2 protein
E Hooley, V Fairweather, AR Clarke… - Nucleic acids …, 2006 - academic.oup.com
The E2 proteins are transcription/replication factors from papillomaviruses. Human
papillomaviruses (HPVs) can be broadly divided in two groups; low-risk HPV subtypes …
papillomaviruses (HPVs) can be broadly divided in two groups; low-risk HPV subtypes …
Protein flexibility directs DNA recognition by the papillomavirus E2 proteins
Although DNA flexibility is known to play an important role in DNA–protein interactions, the
importance of protein flexibility is less well understood. Here, we show that protein dynamics …
importance of protein flexibility is less well understood. Here, we show that protein dynamics …