Graph and model transformation
Graphs are important structures in mathematics, computer science and several other
research and application areas. The concepts of graph transformation and graph grammars …
research and application areas. The concepts of graph transformation and graph grammars …
A compositional account of motifs, mechanisms, and dynamics in biochemical regulatory networks
R Aduddell, J Fairbanks, A Kumar… - …, 2024 - compositionality.episciences.org
Regulatory networks depict promoting or inhibiting interactions between molecules in a
biochemical system. We introduce a category-theoretic formalism for regulatory networks …
biochemical system. We introduce a category-theoretic formalism for regulatory networks …
Study of the bioenergetics to identify the novel pathways as a drug target against Mycobacterium tuberculosis using Petri net
Tuberculosis is one of the life-threatening diseases globally, caused by the bacteria
Mycobacterium tuberculosis. In order to control this epidemic globally, there is an urgent …
Mycobacterium tuberculosis. In order to control this epidemic globally, there is an urgent …
Reversible occurrence nets and causal reversible prime event structures
One of the well-known results in concurrency theory concerns the relationship between
event structures and occurrence nets: an occurrence net can be associated with a prime …
event structures and occurrence nets: an occurrence net can be associated with a prime …
Dynamic causality in event structures
Y Arbach, DS Karcher, K Peters… - Logical Methods in …, 2018 - lmcs.episciences.org
Event Structures (ESs) address the representation of direct relationships between individual
events, usually capturing the notions of causality and conflict. Up to now, such relationships …
events, usually capturing the notions of causality and conflict. Up to now, such relationships …
A distributed operational view of reversible prime event structures
H Melgratti, CA Mezzina… - 2021 36th Annual ACM …, 2021 - ieeexplore.ieee.org
Reversible prime event structures extend the well-known model of prime event structures to
represent reversible computational processes. Essentially, they give abstract descriptions of …
represent reversible computational processes. Essentially, they give abstract descriptions of …
[HTML][HTML] Modeling concurrency with interval traces
R Janicki, X Yin - Information and Computation, 2017 - Elsevier
Interval order structures are useful tools to model abstract concurrent histories, ie sets of
equivalent system runs, when system runs are modeled with interval orders. This paper …
equivalent system runs, when system runs are modeled with interval orders. This paper …
Operational semantics, interval orders and sequences of antichains
A representation of interval orders by sequences of antichains is discussed, and its
relationship to the Fishburn's representation by sequences of the beginnings and endings of …
relationship to the Fishburn's representation by sequences of the beginnings and endings of …
Step traces
In the classical Mazurkiewicz trace approach the behaviour of a concurrent system is
described in terms of sequential observations that differ only with respect to their ordering of …
described in terms of sequential observations that differ only with respect to their ordering of …
Relating reversible petri nets and reversible event structures, categorically
Abstract Causal nets (CNs) are Petri nets where causal dependencies are modelled via
inhibitor arcs. They play the role of occurrence nets when representing the behaviour of a …
inhibitor arcs. They play the role of occurrence nets when representing the behaviour of a …