Graph and model transformation

H Ehrig, C Ermel, U Golas, F Hermann - Monographs in Theoretical …, 2015 - Springer
Graphs are important structures in mathematics, computer science and several other
research and application areas. The concepts of graph transformation and graph grammars …

A compositional account of motifs, mechanisms, and dynamics in biochemical regulatory networks

R Aduddell, J Fairbanks, A Kumar… - …, 2024 - compositionality.episciences.org
Regulatory networks depict promoting or inhibiting interactions between molecules in a
biochemical system. We introduce a category-theoretic formalism for regulatory networks …

Study of the bioenergetics to identify the novel pathways as a drug target against Mycobacterium tuberculosis using Petri net

S Gupta, Z Fatima, S Kumawat - Biosystems, 2021 - Elsevier
Tuberculosis is one of the life-threatening diseases globally, caused by the bacteria
Mycobacterium tuberculosis. In order to control this epidemic globally, there is an urgent …

Reversible occurrence nets and causal reversible prime event structures

H Melgratti, CA Mezzina, I Phillips, GM Pinna… - International Conference …, 2020 - Springer
One of the well-known results in concurrency theory concerns the relationship between
event structures and occurrence nets: an occurrence net can be associated with a prime …

Dynamic causality in event structures

Y Arbach, DS Karcher, K Peters… - Logical Methods in …, 2018 - lmcs.episciences.org
Event Structures (ESs) address the representation of direct relationships between individual
events, usually capturing the notions of causality and conflict. Up to now, such relationships …

A distributed operational view of reversible prime event structures

H Melgratti, CA Mezzina… - 2021 36th Annual ACM …, 2021 - ieeexplore.ieee.org
Reversible prime event structures extend the well-known model of prime event structures to
represent reversible computational processes. Essentially, they give abstract descriptions of …

[HTML][HTML] Modeling concurrency with interval traces

R Janicki, X Yin - Information and Computation, 2017 - Elsevier
Interval order structures are useful tools to model abstract concurrent histories, ie sets of
equivalent system runs, when system runs are modeled with interval orders. This paper …

Operational semantics, interval orders and sequences of antichains

R Janicki, M Koutny - Fundamenta Informaticae, 2019 - content.iospress.com
A representation of interval orders by sequences of antichains is discussed, and its
relationship to the Fishburn's representation by sequences of the beginnings and endings of …

Step traces

R Janicki, J Kleijn, M Koutny, Ł Mikulski - Acta Informatica, 2016 - Springer
In the classical Mazurkiewicz trace approach the behaviour of a concurrent system is
described in terms of sequential observations that differ only with respect to their ordering of …

Relating reversible petri nets and reversible event structures, categorically

H Melgratti, CA Mezzina, GM Pinna - International Conference on Formal …, 2023 - Springer
Abstract Causal nets (CNs) are Petri nets where causal dependencies are modelled via
inhibitor arcs. They play the role of occurrence nets when representing the behaviour of a …