Molecular classification of breast cancer

JYS Tsang, MT Gary - Advances in anatomic pathology, 2020 - journals.lww.com
Cancer classification aims to provide an accurate diagnosis of the disease and prediction of
tumor behavior to facilitate oncologic decision making. Traditional breast cancer …

[HTML][HTML] Tumor heterogeneity in breast cancer

G Turashvili, E Brogi - Frontiers in medicine, 2017 - frontiersin.org
Breast cancer is a heterogeneous disease and differs greatly among different patients
(intertumor heterogeneity) and even within each individual tumor (intratumor heterogeneity) …

[HTML][HTML] Multi-omic machine learning predictor of breast cancer therapy response

SJ Sammut, M Crispin-Ortuzar, SF Chin, E Provenzano… - Nature, 2022 - nature.com
Breast cancers are complex ecosystems of malignant cells and the tumour
microenvironment. The composition of these tumour ecosystems and interactions within …

The chromatin accessibility landscape of primary human cancers

MR Corces, JM Granja, S Shams, BH Louie… - Science, 2018 - science.org
INTRODUCTION Cancer is one of the leading causes of death worldwide. Although the 2%
of the human genome that encodes proteins has been extensively studied, much remains to …

[PDF][PDF] A living biobank of breast cancer organoids captures disease heterogeneity

N Sachs, J De Ligt, O Kopper, E Gogola, G Bounova… - Cell, 2018 - cell.com
Breast cancer (BC) comprises multiple distinct subtypes that differ genetically,
pathologically, and clinically. Here, we describe a robust protocol for long-term culturing of …

[HTML][HTML] The somatic mutation profiles of 2,433 breast cancers refine their genomic and transcriptomic landscapes

B Pereira, SF Chin, OM Rueda, HKM Vollan… - Nature …, 2016 - nature.com
The genomic landscape of breast cancer is complex, and inter-and intra-tumour
heterogeneity are important challenges in treating the disease. In this study, we sequence …

Imaging mass cytometry and multiplatform genomics define the phenogenomic landscape of breast cancer

HR Ali, HW Jackson, VRT Zanotelli, E Danenberg… - Nature Cancer, 2020 - nature.com
Genomic alterations shape cell phenotypes and the structure of tumor ecosystems in poorly
defined ways. To investigate these relationships, we used imaging mass cytometry to …

[HTML][HTML] Patterns of immune infiltration in breast cancer and their clinical implications: a gene-expression-based retrospective study

HR Ali, L Chlon, PDP Pharoah, F Markowetz… - PLoS …, 2016 - journals.plos.org
Background Immune infiltration of breast tumours is associated with clinical outcome.
However, past work has not accounted for the diversity of functionally distinct cell types that …

Whole-genome sequencing of triple-negative breast cancers in a population-based clinical study

J Staaf, D Glodzik, A Bosch, J Vallon-Christersson… - Nature medicine, 2019 - nature.com
Whole-genome sequencing (WGS) brings comprehensive insights to cancer genome
interpretation. To explore the clinical value of WGS, we sequenced 254 triple-negative …

[HTML][HTML] Profiling human breast epithelial cells using single cell RNA sequencing identifies cell diversity

QH Nguyen, N Pervolarakis, K Blake, D Ma… - Nature …, 2018 - nature.com
Breast cancer arises from breast epithelial cells that acquire genetic alterations leading to
subsequent loss of tissue homeostasis. Several distinct epithelial subpopulations have been …