[HTML][HTML] Cellular plasticity in reprogramming, rejuvenation and tumorigenesis: a pioneer TF perspective
A Huyghe, A Trajkova, F Lavial - Trends in cell biology, 2023 - cell.com
The multistep process of in vivo reprogramming, mediated by the transcription factors (TFs)
Oct4, Sox2, Klf4, and c-Myc (OSKM), holds great promise for the development of …
Oct4, Sox2, Klf4, and c-Myc (OSKM), holds great promise for the development of …
[HTML][HTML] Quantifying cancer cell plasticity with gene regulatory networks and single-cell dynamics
SM Groves, V Quaranta - Frontiers in Network Physiology, 2023 - frontiersin.org
Phenotypic plasticity of cancer cells can lead to complex cell state dynamics during tumor
progression and acquired resistance. Highly plastic stem-like states may be inherently drug …
progression and acquired resistance. Highly plastic stem-like states may be inherently drug …
Dissecting and improving gene regulatory network inference using single-cell transcriptome data
L Xue, Y Wu, Y Lin - Genome Research, 2023 - genome.cshlp.org
Single-cell transcriptome data has been widely used to reconstruct gene regulatory
networks (GRNs) controlling critical biological processes such as development and …
networks (GRNs) controlling critical biological processes such as development and …
[HTML][HTML] A logic-incorporated gene regulatory network deciphers principles in cell fate decisions
G Xue, X Zhang, W Li, L Zhang, Z Zhang, X Zhou… - Elife, 2024 - elifesciences.org
Organisms utilize gene regulatory networks (GRN) to make fate decisions, but the regulatory
mechanisms of transcription factors (TF) in GRNs are exceedingly intricate. A longstanding …
mechanisms of transcription factors (TF) in GRNs are exceedingly intricate. A longstanding …
Deterministic and probabilistic fate decisions co‐exist in a single retinal lineage
Correct nervous system development depends on the timely differentiation of progenitor
cells into neurons. While the output of progenitor differentiation is well investigated at the …
cells into neurons. While the output of progenitor differentiation is well investigated at the …
Insights and applications of direct neuronal reprogramming
K Schaukowitch, JA Janas, M Wernig - Current Opinion in Genetics & …, 2023 - Elsevier
Highlights•Mechanisms of direct reprogramming highlight how cells maintain or change cell
fate.•Direct neuronal reprogramming shows advantages in modeling age-related …
fate.•Direct neuronal reprogramming shows advantages in modeling age-related …
[HTML][HTML] Controlling the Expression Level of the Neuronal Reprogramming Factors for a Successful Reprogramming Outcome
N Mseis-Jackson, M Sharma, H Li - Cells, 2024 - mdpi.com
Neuronal reprogramming is a promising approach for making major advancement in
regenerative medicine. Distinct from the approach of induced pluripotent stem cells …
regenerative medicine. Distinct from the approach of induced pluripotent stem cells …
The CUT&RUN blacklist of problematic regions of the genome
Abstract Cleavage Under Targets and Release Using Nuclease (CUT&RUN) is an
increasingly popular technique to map genome-wide binding profiles of histone …
increasingly popular technique to map genome-wide binding profiles of histone …
[HTML][HTML] Proliferation history and transcription factor levels drive direct conversion
NB Wang, BA Lende-Dorn, HO Adewumi, AM Beitz… - bioRxiv, 2023 - ncbi.nlm.nih.gov
The sparse and stochastic nature of reprogramming has obscured our understanding of how
transcription factors drive cells to new identities. To overcome this limit, we developed a …
transcription factors drive cells to new identities. To overcome this limit, we developed a …
Reprogramming Stars# 15: Colliding Cellular Reprogramming Paths—An Interview with Dr. Stefan Stricker
SH Stricker, CF Pereira - Cellular Reprogramming, 2024 - liebertpub.com
Dr. Pereira: Good afternoon. My name is Filipe Pereira, Professor at Lund University and
Editor-in-Chief of Cellular Reprogramming. I am very happy to bring you a new episode of …
Editor-in-Chief of Cellular Reprogramming. I am very happy to bring you a new episode of …