Precision medicine for cancer with next-generation functional diagnostics

AA Friedman, A Letai, DE Fisher, KT Flaherty - Nature Reviews Cancer, 2015 - nature.com
Precision medicine is about matching the right drugs to the right patients. Although this
approach is technology agnostic, in cancer there is a tendency to make precision medicine …

Single-cell RNA-seq: advances and future challenges

AE Saliba, AJ Westermann, SA Gorski… - Nucleic acids …, 2014 - academic.oup.com
Phenotypically identical cells can dramatically vary with respect to behavior during their
lifespan and this variation is reflected in their molecular composition such as the …

Data-driven phenotypic dissection of AML reveals progenitor-like cells that correlate with prognosis

JH Levine, EF Simonds, SC Bendall, KL Davis… - Cell, 2015 - cell.com
Acute myeloid leukemia (AML) manifests as phenotypically and functionally diverse cells,
often within the same patient. Intratumor phenotypic and functional heterogeneity have been …

Single-cell analysis tools for drug discovery and development

JR Heath, A Ribas, PS Mischel - Nature reviews Drug discovery, 2016 - nature.com
The genetic, functional or compositional heterogeneity of healthy and diseased tissues
presents major challenges in drug discovery and development. Such heterogeneity hinders …

viSNE enables visualization of high dimensional single-cell data and reveals phenotypic heterogeneity of leukemia

ED Amir, KL Davis, MD Tadmor, EF Simonds… - Nature …, 2013 - nature.com
New high-dimensional, single-cell technologies offer unprecedented resolution in the
analysis of heterogeneous tissues. However, because these technologies can measure …

Single-cell analysis targeting the proteome

M Labib, SO Kelley - Nature Reviews Chemistry, 2020 - nature.com
The existence of cellular heterogeneity and its central relevance to biological phenomena
provides a strong rationale for a need for analytical methods that enable analysis at the …

Single cell isolation and analysis

P Hu, W Zhang, H Xin, G Deng - Frontiers in cell and developmental …, 2016 - frontiersin.org
Individual cell heterogeneity within a population can be critical to its peculiar function and
fate. Subpopulations studies with mixed mutants and wild types may not be as informative …

Single-cell mass cytometry of differential immune and drug responses across a human hematopoietic continuum

SC Bendall, EF Simonds, P Qiu, ED Amir, PO Krutzik… - Science, 2011 - science.org
Flow cytometry is an essential tool for dissecting the functional complexity of hematopoiesis.
We used single-cell “mass cytometry” to examine healthy human bone marrow, measuring …

Highly multiplexed simultaneous detection of RNAs and proteins in single cells

AP Frei, FA Bava, ER Zunder, EWY Hsieh, SY Chen… - Nature …, 2016 - nature.com
To enable the detection of expression signatures specific to individual cells, we developed
PLAYR (proximity ligation assay for RNA), a method for highly multiplexed transcript …

The dynamic control of signal transduction networks in cancer cells

W Kolch, M Halasz, M Granovskaya… - Nature Reviews …, 2015 - nature.com
Cancer is often considered a genetic disease. However, much of the enormous plasticity of
cancer cells to evolve different phenotypes, to adapt to challenging microenvironments and …