Computational methods for annotation of plant regulatory non-coding RNAs using RNA-seq
AT Vivek, S Kumar - Briefings in Bioinformatics, 2021 - academic.oup.com
Plant transcriptome encompasses numerous endogenous, regulatory non-coding RNAs
(ncRNAs) that play a major biological role in regulating key physiological mechanisms …
(ncRNAs) that play a major biological role in regulating key physiological mechanisms …
[HTML][HTML] miR2118-dependent U-rich phasiRNA production in rice anther wall development
S Araki, NT Le, K Koizumi, A Villar-Briones… - Nature …, 2020 - nature.com
Reproduction-specific small RNAs are vital regulators of germline development in animals
and plants. MicroRNA2118 (miR2118) is conserved in plants and induces the production of …
and plants. MicroRNA2118 (miR2118) is conserved in plants and induces the production of …
Site‐specific analysis reveals candidate cross‐kingdom small RNAs, tRNA and rRNA fragments, and signs of fungal RNA phasing in the barley–powdery mildew …
The establishment of host–microbe interactions requires molecular communication between
both partners, which may involve the mutual transfer of noncoding small RNAs. Previous …
both partners, which may involve the mutual transfer of noncoding small RNAs. Previous …
[HTML][HTML] Spatial distribution of three ARGONAUTEs regulates the anther phasiRNA pathway
H Tamotsu, K Koizumi, AV Briones… - Nature Communications, 2023 - nature.com
Argonaute protein (AGO) in association with small RNAs is the core machinery of RNA
silencing, an essential mechanism for precise development and defense against pathogens …
silencing, an essential mechanism for precise development and defense against pathogens …
Heat‐responsive microRNAs and phased small interfering RNAs in reproductive development of flax
Plants will face increased heat stress due to rising global temperatures. Heat stress affects
plant reproductive development and decreases productivity; however, the underlying …
plant reproductive development and decreases productivity; however, the underlying …
Plant 24-nt reproductive phasiRNAs from intramolecular duplex mRNAs in diverse monocots
In grasses, two pathways that generate diverse and numerous 21-nt (premeiotic) and 24-nt
(meiotic) phased siRNAs are highly enriched in anthers, the male reproductive organs …
(meiotic) phased siRNAs are highly enriched in anthers, the male reproductive organs …
Small noncoding RNA discovery and profiling with sRNAtools based on high-throughput sequencing
Q Liu, C Ding, X Lang, G Guo, J Chen… - Briefings in …, 2021 - academic.oup.com
Abstract Small noncoding RNAs (sRNA/sncRNAs) are generated from different genomic loci
and play important roles in biological processes, such as cell proliferation and the regulation …
and play important roles in biological processes, such as cell proliferation and the regulation …
The evolutionary history of small RNAs in Solanaceae
The Solanaceae or “nightshade” family is an economically important group with remarkable
diversity. To gain a better understanding of how the unique biology of the Solanaceae …
diversity. To gain a better understanding of how the unique biology of the Solanaceae …
[HTML][HTML] Pre-meiotic 21-nucleotide reproductive phasiRNAs emerged in seed plants and diversified in flowering plants
Plant small RNAs are important regulatory elements that fine-tune gene expression and
maintain genome integrity by silencing transposons. Reproductive organs of monocots …
maintain genome integrity by silencing transposons. Reproductive organs of monocots …
Microsporogenesis and the biosynthesis of floral small interfering RNAs in coffee have a unique pattern among eudicots, suggesting a sensitivity to climate changes
KKP de Oliveira, RR de Oliveira… - Plant …, 2024 - Wiley Online Library
Recently, the siRNAs pathways, and especially reproductive phasiRNAs, have attracted
attention in eudicots since their biological roles are still unknown and their biogenesis took …
attention in eudicots since their biological roles are still unknown and their biogenesis took …