Best practices on the differential expression analysis of multi-species RNA-seq

M Chung, VM Bruno, DA Rasko, CA Cuomo, JF Muñoz… - Genome biology, 2021 - Springer
Advances in transcriptome sequencing allow for simultaneous interrogation of differentially
expressed genes from multiple species originating from a single RNA sample, termed dual …

Venn diagram analysis overestimates the extent of circadian rhythm reprogramming

A Pelikan, H Herzel, A Kramer… - The FEBS …, 2022 - Wiley Online Library
The circadian clock modulates key physiological processes in many organisms. This
widespread role of circadian rhythms is typically characterized at the molecular level by …

PD-1 combination therapy with IL-2 modifies CD8+ T cell exhaustion program

M Hashimoto, K Araki, MA Cardenas, P Li, RR Jadhav… - Nature, 2022 - nature.com
Combination therapy with PD-1 blockade and IL-2 is highly effective during chronic
lymphocytic choriomeningitis virus infection. Here we examine the underlying basis for this …

ApoE isoform–and microbiota-dependent progression of neurodegeneration in a mouse model of tauopathy

D Seo, D O'Donnell, N Jain, JD Ulrich, J Herz, Y Li… - Science, 2023 - science.org
Tau-mediated neurodegeneration is a hallmark of Alzheimer's disease. Primary tauopathies
are characterized by pathological tau accumulation and neuronal and synaptic loss …

Microbiota-derived acetate enables the metabolic fitness of the brain innate immune system during health and disease

D Erny, N Dokalis, C Mezö, A Castoldi, O Mossad… - Cell Metabolism, 2021 - cell.com
As tissue macrophages of the central nervous system (CNS), microglia constitute the pivotal
immune cells of this organ. Microglial features are strongly dependent on environmental …

SARS-CoV-2 infection of human ACE2-transgenic mice causes severe lung inflammation and impaired function

ES Winkler, AL Bailey, NM Kafai, S Nair… - Nature …, 2020 - nature.com
Although animal models have been evaluated for severe acute respiratory syndrome
coronavirus 2 (SARS-CoV-2) infection, none have fully recapitulated the lung disease …

[HTML][HTML] Human neutralizing antibodies against SARS-CoV-2 require intact Fc effector functions for optimal therapeutic protection

ES Winkler, P Gilchuk, J Yu, AL Bailey, RE Chen… - Cell, 2021 - cell.com
SARS-CoV-2 has caused the global COVID-19 pandemic. Although passively delivered
neutralizing antibodies against SARS-CoV-2 show promise in clinical trials, their mechanism …

Association of respiratory allergy, asthma, and expression of the SARS-CoV-2 receptor ACE2

DJ Jackson, WW Busse, LB Bacharier… - Journal of Allergy and …, 2020 - jacionline.org
SARS-CoV-2 uses angiotensin-converting enzyme 2 (ACE2) as its cellular receptor, as do
SARS-CoV and the coronavirus NL63. 1 Higher ACE2 expression increases in vitro …

Dynamic shifts in the composition of resident and recruited macrophages influence tissue remodeling in NASH

S Daemen, A Gainullina, G Kalugotla, L He, MM Chan… - Cell reports, 2021 - cell.com
Macrophage-mediated inflammation is critical in the pathogenesis of non-alcoholic
steatohepatitis (NASH). Here, we describe that, with high-fat, high-sucrose-diet feeding …

[HTML][HTML] Intercellular mitochondria transfer to macrophages regulates white adipose tissue homeostasis and is impaired in obesity

JR Brestoff, CB Wilen, JR Moley, Y Li, W Zou… - Cell metabolism, 2021 - cell.com
Recent studies suggest that mitochondria can be transferred between cells to support the
survival of metabolically compromised cells. However, whether intercellular mitochondria …