Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

DW Huang, BT Sherman, RA Lempicki - Nucleic acids research, 2009 - academic.oup.com
Functional analysis of large gene lists, derived in most cases from emerging high-throughput
genomic, proteomic and bioinformatics scanning approaches, is still a challenging and …

Big data analytics in bioinformatics: architectures, techniques, tools and issues

H Kashyap, HA Ahmed, N Hoque, S Roy… - … modeling analysis in …, 2016 - Springer
Bioinformatics research is characterized by voluminous and incremental datasets and
complex data analytics methods. The machine learning methods used in bioinformatics are …

Big data analytics in bioinformatics: A machine learning perspective

H Kashyap, HA Ahmed, N Hoque, S Roy… - arXiv preprint arXiv …, 2015 - arxiv.org
Bioinformatics research is characterized by voluminous and incremental datasets and
complex data analytics methods. The machine learning methods used in bioinformatics are …

Identification of genes involved in radioresistance of nasopharyngeal carcinoma by integrating gene ontology and protein-protein interaction networks

Y Guo, XD Zhu, S Qu, L Li, F Su… - International …, 2012 - spandidos-publications.com
Radioresistance remains one of the important factors in relapse and metastasis of
nasopharyngeal carcinoma. Thus, it is imperative to identify genes involved in …

Modeling transcriptional networks regulating secondary growth and wood formation in forest trees

L Liu, V Filkov, A Groover - Physiologia plantarum, 2014 - Wiley Online Library
The complex interactions among the genes that underlie a biological process can be
modeled and presented as a transcriptional network, in which genes (nodes) and their …

[HTML][HTML] Differences in X-chromosome transcriptional activity and cholesterol metabolism between placentae from swine breeds from Asian and Western origins

SR Bischoff, SQ Tsai, NE Hardison, AA Motsinger-Reif… - PloS one, 2013 - journals.plos.org
To gain insight into differences in placental physiology between two swine breeds noted for
their dissimilar reproductive performance, that is, the Chinese Meishan and white composite …

[HTML][HTML] Comparison of lists of genes based on functional profiles

M Salicrú, J Ocaña, A Sánchez-Pla - BMC bioinformatics, 2011 - Springer
Background How to compare studies on the basis of their biological significance is a
problem of central importance in high-throughput genomics. Many methods for performing …

[PDF][PDF] goProfiles: an R package for the Statistical Analysis of Functional Profiles

A Sánchez, J Ocaña, M Salicrú - Barcelona: University of …, 2013 - mirror.sjtu.edu.cn
goProfiles: an R package for the Statistical Analysis of Functional Profiles Page 1 goProfiles:
an R package for the Statistical Analysis of Functional Profiles Alex Sánchez, Jordi Ocaña and …

Data mining, big data, data analytics: Big data analytics in bioinformatics

PP Panigrahi, TR Singh - Library and information services for …, 2017 - igi-global.com
In this digital and computing world, data formation and collection rate are growing very
rapidly. With these improved proficiencies of data storage and fast computation along with …

Fundamentals of gene ontology functional annotation

VK Khodiyar, EC Dimmer, RP Huntley… - … : From Analysis to …, 2010 - Wiley Online Library
Over the past decade, technological advances such as whole genome sequencing,
microarray technology and high-throughput proteomics techniques have revolutionized our …