Structure and function of naturally evolved de novo proteins

E Bornberg-Bauer, K Hlouchova, A Lange - Current Opinion in Structural …, 2021 - Elsevier
Highlights•Comparative evolutionary genomics has revealed that novel protein coding
genes can emerge randomly from non-coding DNA.•The existence of de novo proteins …

Prebiotic network evolution: six key parameters

P Nghe, W Hordijk, SA Kauffman, SI Walker… - Molecular …, 2015 - pubs.rsc.org
The origins of life likely required the cooperation among a set of molecular species
interacting in a network. If so, then the earliest modes of evolutionary change would have …

[引用][C] The Systems View of Life: A Unifying Vision

F Capra - 2014 - books.google.com
Over the past thirty years, a new systemic conception of life has emerged at the forefront of
science. New emphasis has been given to complexity, networks, and patterns of …

[图书][B] The emergence of life: from chemical origins to synthetic biology

PL Luisi - 2016 - books.google.com
Addressing the emergence of life from a systems biology perspective, this new edition has
undergone extensive revision, reflecting changes in scientific understanding and evolution …

Origins of life: The Protein Folding Problem all over again?

CD Kocher, KA Dill - Proceedings of the National Academy of Sciences, 2024 - pnas.org
How did specific useful protein sequences arise from simpler molecules at the origin of life?
This seemingly needle-in-a-haystack problem has remarkably close resemblance to the old …

Diversity and evolution of the emerging Pandoraviridae family

M Legendre, E Fabre, O Poirot, S Jeudy… - Nature …, 2018 - nature.com
With DNA genomes reaching 2.5 Mb packed in particles of bacterium-like shape and
dimension, the first two Acanthamoeba-infecting pandoraviruses remained up to now the …

Advances in the directed evolution of proteins

MD Lane, B Seelig - Current opinion in chemical biology, 2014 - Elsevier
Highlights•Advances in directed protein evolution during previous biennium are
reviewed.•Technology innovations enable evolution of previously inaccessible …

Random protein sequences can form defined secondary structures and are well-tolerated in vivo

V Tretyachenko, J Vymětal, L Bednárová… - Scientific Reports, 2017 - nature.com
The protein sequences found in nature represent a tiny fraction of the potential sequences
that could be constructed from the 20-amino-acid alphabet. To help define the properties …

Modern and prebiotic amino acids support distinct structural profiles in proteins

V Tretyachenko, J Vymětal, T Neuwirthová… - Open …, 2022 - royalsocietypublishing.org
The earliest proteins had to rely on amino acids available on early Earth before the
biosynthetic pathways for more complex amino acids evolved. In extant proteins, a …

Small and random peptides: An unexplored reservoir of potentially functional primitive organocatalysts. The case of seryl-histidine

R Wieczorek, K Adamala, T Gasperi, F Polticelli… - Life, 2017 - mdpi.com
Catalysis is an essential feature of living systems biochemistry, and probably, it played a key
role in primordial times, helping to produce more complex molecules from simple ones …