Graph representation learning in biomedicine and healthcare
Networks—or graphs—are universal descriptors of systems of interacting elements. In
biomedicine and healthcare, they can represent, for example, molecular interactions …
biomedicine and healthcare, they can represent, for example, molecular interactions …
How can natural language processing help model informed drug development?: a review
Objective To summarize applications of natural language processing (NLP) in model
informed drug development (MIDD) and identify potential areas of improvement. Materials …
informed drug development (MIDD) and identify potential areas of improvement. Materials …
Biomedical knowledge graph learning for drug repurposing by extending guilt-by-association to multiple layers
Computational drug repurposing aims to identify new indications for existing drugs by
utilizing high-throughput data, often in the form of biomedical knowledge graphs. However …
utilizing high-throughput data, often in the form of biomedical knowledge graphs. However …
Affinity2Vec: drug-target binding affinity prediction through representation learning, graph mining, and machine learning
Drug-target interaction (DTI) prediction plays a crucial role in drug repositioning and virtual
drug screening. Most DTI prediction methods cast the problem as a binary classification task …
drug screening. Most DTI prediction methods cast the problem as a binary classification task …
Modality-DTA: multimodality fusion strategy for drug–target affinity prediction
Prediction of the drug–target affinity (DTA) plays an important role in drug discovery. Existing
deep learning methods for DTA prediction typically leverage a single modality, namely …
deep learning methods for DTA prediction typically leverage a single modality, namely …
Ammvf-dti: A novel model predicting drug–target interactions based on attention mechanism and multi-view fusion
L Wang, Y Zhou, Q Chen - International Journal of Molecular Sciences, 2023 - mdpi.com
Accurate identification of potential drug–target interactions (DTIs) is a crucial task in drug
development and repositioning. Despite the remarkable progress achieved in recent years …
development and repositioning. Despite the remarkable progress achieved in recent years …
A deep learning model predicts the presence of diverse cancer types using circulating tumor cells
Circulating tumor cells (CTCs) are cancer cells that detach from the primary tumor and
intravasate into the bloodstream. Thus, non-invasive liquid biopsies are being used to …
intravasate into the bloodstream. Thus, non-invasive liquid biopsies are being used to …
Drug repurposing in silico screening platforms
JGL Mullins - Biochemical Society Transactions, 2022 - portlandpress.com
Over the last decade, for the first time, substantial efforts have been directed at the
development of dedicated in silico platforms for drug repurposing, including initiatives …
development of dedicated in silico platforms for drug repurposing, including initiatives …
Multi-omics integration analysis of GPCRs in pan-cancer to uncover inter-omics relationships and potential driver genes
S Li, X Chen, J Chen, B Wu, J Liu, Y Guo, M Li… - Computers in Biology …, 2023 - Elsevier
G protein-coupled receptors (GPCRs) are the largest drug target family. Unfortunately,
applications of GPCRs in cancer therapy are scarce due to very limited knowledge …
applications of GPCRs in cancer therapy are scarce due to very limited knowledge …
A new framework for drug–disease association prediction combing light-gated message passing neural network and gated fusion mechanism
BM Liu, YL Gao, DJ Zhang, F Zhou… - Briefings in …, 2022 - academic.oup.com
With the development of research on the complex aetiology of many diseases,
computational drug repositioning methodology has proven to be a shortcut to costly and …
computational drug repositioning methodology has proven to be a shortcut to costly and …