Next-generation proteomics: towards an integrative view of proteome dynamics
Next-generation sequencing allows the analysis of genomes, including those representing
disease states. However, the causes of most disorders are multifactorial, and systems-level …
disease states. However, the causes of most disorders are multifactorial, and systems-level …
Targeted quantitation of proteins by mass spectrometry
DC Liebler, LJ Zimmerman - Biochemistry, 2013 - ACS Publications
Quantitative measurement of proteins is one of the most fundamental analytical tasks in a
biochemistry laboratory, but widely used immunochemical methods often have limited …
biochemistry laboratory, but widely used immunochemical methods often have limited …
Connectomic comparison of mouse and human cortex
The human cerebral cortex houses 1000 times more neurons than that of the cerebral cortex
of a mouse, but the possible differences in synaptic circuits between these species are still …
of a mouse, but the possible differences in synaptic circuits between these species are still …
TMTpro reagents: a set of isobaric labeling mass tags enables simultaneous proteome-wide measurements across 16 samples
J Li, JG Van Vranken, L Pontano Vaites… - Nature …, 2020 - nature.com
Isobaric labeling empowers proteome-wide expression measurements simultaneously
across multiple samples. Here an expanded set of 16 isobaric reagents based on an …
across multiple samples. Here an expanded set of 16 isobaric reagents based on an …
Integrative proteomics and phosphoproteomics profiling reveals dynamic signaling networks and bioenergetics pathways underlying T cell activation
The molecular circuits by which antigens activate quiescent T cells remain poorly
understood. We combined temporal profiling of the whole proteome and phosphoproteome …
understood. We combined temporal profiling of the whole proteome and phosphoproteome …
The one hour yeast proteome
We describe the comprehensive analysis of the yeast proteome in just over one hour of
optimized analysis. We achieve this expedited proteome characterization with improved …
optimized analysis. We achieve this expedited proteome characterization with improved …
Calorie restriction and SIRT3 trigger global reprogramming of the mitochondrial protein acetylome
Calorie restriction (CR) extends life span in diverse species. Mitochondria play a key role in
CR adaptation; however, the molecular details remain elusive. We developed and applied a …
CR adaptation; however, the molecular details remain elusive. We developed and applied a …
Quantitative phosphoproteomic analysis of the molecular substrates of sleep need
Z Wang, J Ma, C Miyoshi, Y Li, M Sato, Y Ogawa, T Lou… - Nature, 2018 - nature.com
Sleep and wake have global effects on brain physiology, from molecular changes,,–and
neuronal activities to synaptic plasticity,,,–. Sleep–wake homeostasis is maintained by the …
neuronal activities to synaptic plasticity,,,–. Sleep–wake homeostasis is maintained by the …
[HTML][HTML] Structurally distinct Ca2+ signaling domains of sperm flagella orchestrate tyrosine phosphorylation and motility
Spermatozoa must leave one organism, navigate long distances, and deliver their paternal
DNA into a mature egg. For successful navigation and delivery, a sperm-specific calcium …
DNA into a mature egg. For successful navigation and delivery, a sperm-specific calcium …
Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and Rad3-related (ATR) dependent DNA damage …
E Roitinger, M Hofer, T Köcher, P Pichler… - Molecular & Cellular …, 2015 - ASBMB
The reversible phosphorylation of proteins on serine, threonine, and tyrosine residues is an
important biological regulatory mechanism. In the context of genome integrity, signaling …
important biological regulatory mechanism. In the context of genome integrity, signaling …