cis-Regulatory Elements in Plant Development, Adaptation, and Evolution
cis-Regulatory elements encode the genomic blueprints that ensure the proper
spatiotemporal patterning of gene expression necessary for appropriate development and …
spatiotemporal patterning of gene expression necessary for appropriate development and …
Graph-based pan-genomes: increased opportunities in plant genomics
S Wang, YQ Qian, RP Zhao, LL Chen… - Journal of …, 2023 - academic.oup.com
Due to the development of sequencing technology and the great reduction in sequencing
costs, an increasing number of plant genomes have been assembled, and numerous …
costs, an increasing number of plant genomes have been assembled, and numerous …
Pangenomics in crop improvement—from coding structural variations to finding regulatory variants with pangenome graphs
Since the first reported crop pangenome in 2014, advances in high‐throughput and cost‐
effective DNA sequencing technologies facilitated multiple such studies including the …
effective DNA sequencing technologies facilitated multiple such studies including the …
On the role of transposable elements in the regulation of gene expression and subgenomic interactions in crop genomes
Transposable elements (TEs) represent a major and variable portion of plant genomes, and
recent progress in genetics and genomics has highlighted the importance of different TE …
recent progress in genetics and genomics has highlighted the importance of different TE …
The evolution and function of transposons in epigenetic regulation in response to the environment
SP Klein, SN Anderson - Current Opinion in Plant Biology, 2022 - Elsevier
Transposable elements (TEs) make up a major proportion of plant genomes. Despite their
prevalence genome-wide, TEs are often tossed aside as “junk DNA” since they rarely cause …
prevalence genome-wide, TEs are often tossed aside as “junk DNA” since they rarely cause …
MINI‐AC: inference of plant gene regulatory networks using bulk or single‐cell accessible chromatin profiles
N Manosalva Pérez, C Ferrari, J Engelhorn… - The Plant …, 2024 - Wiley Online Library
Gene regulatory networks (GRNs) represent the interactions between transcription factors
(TF) and their target genes. Plant GRNs control transcriptional programs involved in growth …
(TF) and their target genes. Plant GRNs control transcriptional programs involved in growth …
Canalization of genome-wide transcriptional activity in Arabidopsis thaliana accessions by MET1-dependent CG methylation
Background Despite its conserved role on gene expression and transposable element (TE)
silencing, genome-wide CG methylation differs substantially between wild Arabidopsis …
silencing, genome-wide CG methylation differs substantially between wild Arabidopsis …
Genomic variations combined with epigenetic modifications rewire open chromatin in rice
M Li, Y Feng, Q Han, Y Yang, Y Shi, D Zheng… - Plant …, 2023 - academic.oup.com
Cis-regulatory elements (CREs) fine-tune gene transcription in eukaryotes. CREs with
sequence variations play vital roles in driving plant or crop domestication. However, how …
sequence variations play vital roles in driving plant or crop domestication. However, how …
Intergenic spaces: a new frontier to improving plant health
To more sustainably mitigate the impact of crop diseases on plant health and productivity,
there is a need for broader spectrum, long‐lasting resistance traits. Defense response (DR) …
there is a need for broader spectrum, long‐lasting resistance traits. Defense response (DR) …
Annotation of the Turnera subulata (Passifloraceae) Draft Genome Reveals the S-Locus Evolved after the Divergence of Turneroideae from Passifloroideae in a …
A majority of Turnera species (Passifloraceae) exhibit distyly, a reproductive system
involving both self-incompatibility and reciprocal herkogamy. This system differs from self …
involving both self-incompatibility and reciprocal herkogamy. This system differs from self …