Computational inference of gene regulatory networks: approaches, limitations and opportunities
Gene regulatory networks lie at the core of cell function control. In E. coli and S. cerevisiae,
the study of gene regulatory networks has led to the discovery of regulatory mechanisms …
the study of gene regulatory networks has led to the discovery of regulatory mechanisms …
An efficient CRISPR–Cas12a promoter editing system for crop improvement
J Zhou, G Liu, Y Zhao, R Zhang, X Tang, L Li, X Jia… - Nature Plants, 2023 - nature.com
Promoter editing represents an innovative approach to introduce quantitative trait variation
(QTV) in crops. However, an efficient promoter editing system for QTV needs to be …
(QTV) in crops. However, an efficient promoter editing system for QTV needs to be …
Cotranscriptional RNA processing and modification in plants
The activities of RNA polymerases shape the epigenetic landscape of genomes with
profound consequences for genome integrity and gene expression. A fundamental event …
profound consequences for genome integrity and gene expression. A fundamental event …
Cold stress induces enhanced chromatin accessibility and bivalent histone modifications H3K4me3 and H3K27me3 of active genes in potato
Background Cold stress can greatly affect plant growth and development. Plants have
developed special systems to respond to and tolerate cold stress. While plant scientists have …
developed special systems to respond to and tolerate cold stress. While plant scientists have …
Deciphering the molecular basis of tissue-specific gene expression in plants: Can synthetic biology help?
AE Yaschenko, M Fenech, S Mazzoni-Putman… - Current opinion in plant …, 2022 - Elsevier
Gene expression differences between distinct cell types are orchestrated by specific sets of
transcription factors and epigenetic regulators acting upon the genome. In plants, the …
transcription factors and epigenetic regulators acting upon the genome. In plants, the …
H2A. Z represses gene expression by modulating promoter nucleosome structure and enhancer histone modifications in Arabidopsis
Deposition of the histone variant H2A. Z at gene bodies regulates transcription by modifying
chromatin accessibility in plants. However, the role of H2A. Z enrichment at the promoter and …
chromatin accessibility in plants. However, the role of H2A. Z enrichment at the promoter and …
3D genome architecture coordinates trans and cis regulation of differentially expressed ear and tassel genes in maize
Y Sun, L Dong, Y Zhang, D Lin, W Xu, C Ke, L Han… - Genome biology, 2020 - Springer
Background Maize ears and tassels are two separate types of inflorescence which are
initiated by similar developmental processes but gradually develop distinct architectures …
initiated by similar developmental processes but gradually develop distinct architectures …
[HTML][HTML] CRISPR/Cas-mediated editing of cis-regulatory elements for crop improvement
To improve future agricultural production, major technological advances are required to
increase crop production and yield. Targeting the coding region of genes via the Clustered …
increase crop production and yield. Targeting the coding region of genes via the Clustered …
Divergent regulation of Arabidopsis SAUR genes: a focus on the SAUR10-clade
H van Mourik, ADJ van Dijk, N Stortenbeker… - BMC plant biology, 2017 - Springer
Abstract Background Small Auxin-Upregulated RNA (SAUR) genes encode growth
regulators that induce cell elongation. Arabidopsis contains more than 70 SAUR genes, of …
regulators that induce cell elongation. Arabidopsis contains more than 70 SAUR genes, of …
Transcription-driven chromatin repression of Intragenic transcription start sites
Progression of RNA polymerase II (RNAPII) transcription relies on the appropriately
positioned activities of elongation factors. The resulting profile of factors and chromatin …
positioned activities of elongation factors. The resulting profile of factors and chromatin …