The expanding diagnostic toolbox for rare genetic diseases
KD Kernohan, KM Boycott - Nature Reviews Genetics, 2024 - nature.com
Genomic technologies, such as targeted, exome and short-read genome sequencing
approaches, have revolutionized the care of patients with rare genetic diseases. However …
approaches, have revolutionized the care of patients with rare genetic diseases. However …
Will variants of uncertain significance still exist in 2030?
Summary In 2020, the National Human Genome Research Institute (NHGRI) made ten" bold
predictions," including that" the clinical relevance of all encountered genomic variants will be …
predictions," including that" the clinical relevance of all encountered genomic variants will be …
Advancing variant effect prediction using protein language models
BJ Livesey, JA Marsh - Nature Genetics, 2023 - nature.com
Advancing variant effect prediction using protein language models | Nature Genetics Skip to main
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Predicting pathogenic protein variants
JA Marsh, SA Teichmann - Science, 2023 - science.org
Many of the genetic mutations that cause disease in humans occur in protein-coding
regions. Although the capacity to sequence DNA and identify these variants has …
regions. Although the capacity to sequence DNA and identify these variants has …
Predicting RNA-seq coverage from DNA sequence as a unifying model of gene regulation
Sequence-based machine learning models trained on genome-scale biochemical assays
improve our ability to interpret genetic variants by providing functional predictions describing …
improve our ability to interpret genetic variants by providing functional predictions describing …
Ensembl 2024
PW Harrison, MR Amode… - Nucleic acids …, 2024 - academic.oup.com
Abstract Ensembl (https://www. ensembl. org) is a freely available genomic resource that has
produced high-quality annotations, tools, and services for vertebrates and model organisms …
produced high-quality annotations, tools, and services for vertebrates and model organisms …
Deep mutational scanning quantifies DNA binding and predicts clinical outcomes of PAX6 variants
AF McDonnell, M Plech, BJ Livesey… - Molecular Systems …, 2024 - embopress.org
Nonsense and missense mutations in the transcription factor PAX6 cause a wide range of
eye development defects, including aniridia, microphthalmia and coloboma. To understand …
eye development defects, including aniridia, microphthalmia and coloboma. To understand …
High-throughput assays to assess variant effects on disease
K Ma, LO Gauthier, F Cheung… - Disease Models & …, 2024 - journals.biologists.com
Interpreting the wealth of rare genetic variants discovered in population-scale sequencing
efforts and deciphering their associations with human health and disease present a critical …
efforts and deciphering their associations with human health and disease present a critical …
Functional studies of deafness-associated pendrin and prestin variants
S Takahashi, T Kojima, K Wasano… - International Journal of …, 2024 - mdpi.com
Pendrin and prestin are evolutionary-conserved membrane proteins that are essential for
normal hearing. Dysfunction of these proteins results in hearing loss in humans, and …
normal hearing. Dysfunction of these proteins results in hearing loss in humans, and …
Alignment-based protein mutational landscape prediction: doing more with less
The wealth of genomic data has boosted the development of computational methods
predicting the phenotypic outcomes of missense variants. The most accurate ones exploit …
predicting the phenotypic outcomes of missense variants. The most accurate ones exploit …