Fluoroquinolone resistance: mechanisms, impact on bacteria, and role in evolutionary success
LS Redgrave, SB Sutton, MA Webber… - Trends in microbiology, 2014 - cell.com
Quinolone and fluoroquinolone antibiotics are potent, broad-spectrum agents commonly
used to treat a range of infections. Resistance to these agents is multifactorial and can be via …
used to treat a range of infections. Resistance to these agents is multifactorial and can be via …
[PDF][PDF] Mechanisms of action of ribosomally synthesized and posttranslationally modified peptides (RiPPs)
L Cao, T Do, AJ Link - Journal of Industrial Microbiology and …, 2021 - academic.oup.com
Natural products remain a critical source of medicines and drug leads. One of the most
rapidly growing superclasses of natural products is RiPPs: ribosomally synthesized and …
rapidly growing superclasses of natural products is RiPPs: ribosomally synthesized and …
[HTML][HTML] Mechanism of transcriptional bursting in bacteria
Transcription of highly expressed genes has been shown to occur in stochastic bursts. But
the origin of such ubiquitous phenomenon has not been understood. Here, we present the …
the origin of such ubiquitous phenomenon has not been understood. Here, we present the …
Architecture of the Escherichia coli nucleoid
SC Verma, Z Qian, SL Adhya - PLoS genetics, 2019 - journals.plos.org
How genomes are organized within cells and how the 3D architecture of a genome
influences cellular functions are significant questions in biology. A bacterial genomic DNA …
influences cellular functions are significant questions in biology. A bacterial genomic DNA …
Direct and indirect effects of H-NS and Fis on global gene expression control in Escherichia coli
C Kahramanoglou, ASN Seshasayee… - Nucleic acids …, 2011 - academic.oup.com
Nucleoid-associated proteins (NAPs) are global regulators of gene expression in
Escherichia coli, which affect DNA conformation by bending, wrapping and bridging the …
Escherichia coli, which affect DNA conformation by bending, wrapping and bridging the …
The organization of the bacterial genome
EPC Rocha - Annual review of genetics, 2008 - annualreviews.org
Many bacterial cellular processes interact intimately with the chromosome. Such interplay is
the major driving force of genome structure or organization. Interactions take place at …
the major driving force of genome structure or organization. Interactions take place at …
Genome-wide prediction of G4 DNA as regulatory motifs: role in Escherichia coli global regulation
P Rawal, VBR Kummarasetti, J Ravindran… - Genome …, 2006 - genome.cshlp.org
The role of nonlinear DNA in replication, recombination, and transcription has become
evident in recent years. Although several studies have predicted and characterized …
evident in recent years. Although several studies have predicted and characterized …
Transcription-dependent dynamic supercoiling is a short-range genomic force
F Kouzine, A Gupta, L Baranello, D Wojtowicz… - Nature structural & …, 2013 - nature.com
Transcription has the capacity to mechanically modify DNA topology, DNA structure and
nucleosome arrangement. Resulting from ongoing transcription, these modifications in turn …
nucleosome arrangement. Resulting from ongoing transcription, these modifications in turn …
Topoisomerase-modulated genome-wide DNA supercoiling domains colocalize with nuclear compartments and regulate human gene expression
DNA supercoiling is a biophysical feature of the double helix with a pivotal role in biological
processes. However, understanding of DNA supercoiling in the chromatin remains limited …
processes. However, understanding of DNA supercoiling in the chromatin remains limited …
DNA supercoiling and transcription in bacteria: a two-way street
CJ Dorman - BMC molecular and cell biology, 2019 - Springer
Background The processes of DNA supercoiling and transcription are interdependent
because the movement of a transcription elongation complex simultaneously induces under …
because the movement of a transcription elongation complex simultaneously induces under …