Fluoroquinolone resistance: mechanisms, impact on bacteria, and role in evolutionary success

LS Redgrave, SB Sutton, MA Webber… - Trends in microbiology, 2014 - cell.com
Quinolone and fluoroquinolone antibiotics are potent, broad-spectrum agents commonly
used to treat a range of infections. Resistance to these agents is multifactorial and can be via …

[PDF][PDF] Mechanisms of action of ribosomally synthesized and posttranslationally modified peptides (RiPPs)

L Cao, T Do, AJ Link - Journal of Industrial Microbiology and …, 2021 - academic.oup.com
Natural products remain a critical source of medicines and drug leads. One of the most
rapidly growing superclasses of natural products is RiPPs: ribosomally synthesized and …

[HTML][HTML] Mechanism of transcriptional bursting in bacteria

S Chong, C Chen, H Ge, XS Xie - Cell, 2014 - cell.com
Transcription of highly expressed genes has been shown to occur in stochastic bursts. But
the origin of such ubiquitous phenomenon has not been understood. Here, we present the …

Architecture of the Escherichia coli nucleoid

SC Verma, Z Qian, SL Adhya - PLoS genetics, 2019 - journals.plos.org
How genomes are organized within cells and how the 3D architecture of a genome
influences cellular functions are significant questions in biology. A bacterial genomic DNA …

Direct and indirect effects of H-NS and Fis on global gene expression control in Escherichia coli

C Kahramanoglou, ASN Seshasayee… - Nucleic acids …, 2011 - academic.oup.com
Nucleoid-associated proteins (NAPs) are global regulators of gene expression in
Escherichia coli, which affect DNA conformation by bending, wrapping and bridging the …

The organization of the bacterial genome

EPC Rocha - Annual review of genetics, 2008 - annualreviews.org
Many bacterial cellular processes interact intimately with the chromosome. Such interplay is
the major driving force of genome structure or organization. Interactions take place at …

Genome-wide prediction of G4 DNA as regulatory motifs: role in Escherichia coli global regulation

P Rawal, VBR Kummarasetti, J Ravindran… - Genome …, 2006 - genome.cshlp.org
The role of nonlinear DNA in replication, recombination, and transcription has become
evident in recent years. Although several studies have predicted and characterized …

Transcription-dependent dynamic supercoiling is a short-range genomic force

F Kouzine, A Gupta, L Baranello, D Wojtowicz… - Nature structural & …, 2013 - nature.com
Transcription has the capacity to mechanically modify DNA topology, DNA structure and
nucleosome arrangement. Resulting from ongoing transcription, these modifications in turn …

Topoisomerase-modulated genome-wide DNA supercoiling domains colocalize with nuclear compartments and regulate human gene expression

Q Yao, L Zhu, Z Shi, S Banerjee, C Chen - Nature Structural & Molecular …, 2024 - nature.com
DNA supercoiling is a biophysical feature of the double helix with a pivotal role in biological
processes. However, understanding of DNA supercoiling in the chromatin remains limited …

DNA supercoiling and transcription in bacteria: a two-way street

CJ Dorman - BMC molecular and cell biology, 2019 - Springer
Background The processes of DNA supercoiling and transcription are interdependent
because the movement of a transcription elongation complex simultaneously induces under …