Which evolutionary processes influence natural genetic variation for phenotypic traits?

T Mitchell-Olds, JH Willis, DB Goldstein - Nature Reviews Genetics, 2007 - nature.com
Although many studies provide examples of evolutionary processes such as adaptive
evolution, balancing selection, deleterious variation and genetic drift, the relative importance …

Plant-parasite coevolution: bridging the gap between genetics and ecology

JKM Brown, A Tellier - Annual review of phytopathology, 2011 - annualreviews.org
We review current ideas about coevolution of plants and parasites, particularly processes
that generate genetic diversity. Frequencies of host resistance and parasite virulence alleles …

The loci of repeated evolution: a catalog of genetic hotspots of phenotypic variation

A Martin, V Orgogozo - Evolution, 2013 - academic.oup.com
What is the nature of the genetic changes underlying phenotypic evolution? We have
catalogued 1008 alleles described in the literature that cause phenotypic differences among …

Population genetics of genomics-based crop improvement methods

MT Hamblin, ES Buckler, JL Jannink - Trends in Genetics, 2011 - cell.com
Many genome-wide association studies (GWAS) in humans are concluding that, even with
very large sample sizes and high marker densities, most of the genetic basis of complex …

Natural variation and functional analyses provide evidence for co‐evolution between plant eIF4E and potyviral VPg

C Charron, M Nicolaï, JL Gallois, C Robaglia… - The Plant …, 2008 - Wiley Online Library
Amino acid substitutions in the eukaryotic translation initiation factor 4E (eIF4E) result in
recessive resistance to potyviruses in a range of plant species, including Capsicum spp …

Genomic variability as a driver of plant–pathogen coevolution?

TL Karasov, MW Horton, J Bergelson - Current opinion in plant biology, 2014 - Elsevier
Highlights•Pathogen virulence and plant resistance genes are among the most variable
genes.•Selection on resistance alleles tends to be diversifying or balancing.•It is unclear …

Plastic Transcriptomes Stabilize Immunity to Pathogen Diversity: The Jasmonic Acid and Salicylic Acid Networks within the Arabidopsis/Botrytis Pathosystem

W Zhang, JA Corwin, D Copeland, J Feusier… - The Plant …, 2017 - academic.oup.com
To respond to pathogen attack, selection and associated evolution has led to the creation of
plant immune system that are a highly effective and inducible defense system. Central to this …

Ecological and evolutionary genomics in the wild tomatoes (Solanum sect. Lycopersicon)

LC Moyle - Evolution, 2008 - academic.oup.com
The plant group Solanum section Lycopersicon (the clade containing the domesticated
tomato and its wild relatives) is ideal for integrating genomic tools and approaches into …

Repeated loss of the ability of a wild pepper disease resistance gene to function at high temperatures suggests that thermoresistance is a costly trait

N Poulicard, I Pagán, P González‐Jara… - New …, 2024 - Wiley Online Library
Specificity in plant–pathogen gene‐for‐gene (GFG) interactions is determined by the
recognition of pathogen proteins by the products of plant resistance (R) genes. The …

Subsets of NLR genes show differential signatures of adaptation during colonization of new habitats

R Stam, GA Silva‐Arias, A Tellier - New Phytologist, 2019 - Wiley Online Library
Nucleotide binding site, leucine‐rich repeat receptors (NLR s) are canonical resistance (R)
genes in plants, fungi and animals, functioning as central (helper) and peripheral (sensor) …